Results 21 - 40 of 160 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13935 | 5' | -60.7 | NC_003521.1 | + | 75812 | 0.66 | 0.809096 |
Target: 5'- uGGCguaGCCGcCGCCGgCGCcGCUGa- -3' miRNA: 3'- gCCGa--CGGCaGUGGCaGCGaCGACga -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 97064 | 0.66 | 0.783541 |
Target: 5'- aCGcGCgaucgUGCCcguagCGCCGcCGCUGCUGCc -3' miRNA: 3'- -GC-CG-----ACGGca---GUGGCaGCGACGACGa -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 113344 | 0.66 | 0.79219 |
Target: 5'- cCGGCgGCCGUCugCGccUCGUagcccggaaggUGCUGg- -3' miRNA: 3'- -GCCGaCGGCAGugGC--AGCG-----------ACGACga -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 202327 | 0.66 | 0.808264 |
Target: 5'- cCGGuCUGUCGUcCGCCaugcugaggagacGUCGUgGCUGCa -3' miRNA: 3'- -GCC-GACGGCA-GUGG-------------CAGCGaCGACGa -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 120328 | 0.66 | 0.809096 |
Target: 5'- uCGaGacaUGCgGUgGCCGcUGCUGCUGCUu -3' miRNA: 3'- -GC-Cg--ACGgCAgUGGCaGCGACGACGA- -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 49824 | 0.67 | 0.738622 |
Target: 5'- aGGCUGCCcacGUcCACCuG-CGCcUGCUGCc -3' miRNA: 3'- gCCGACGG---CA-GUGG-CaGCG-ACGACGa -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 142104 | 0.67 | 0.738622 |
Target: 5'- cCGGgaGCCGUagGCgCGUCGCaggaacuggUGCUGUUg -3' miRNA: 3'- -GCCgaCGGCAg-UG-GCAGCG---------ACGACGA- -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 233186 | 0.67 | 0.778292 |
Target: 5'- gCGGCcGCCGUUACCGUCGgUcguucccgacaguccGCcGCc -3' miRNA: 3'- -GCCGaCGGCAGUGGCAGCgA---------------CGaCGa -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 28413 | 0.67 | 0.765884 |
Target: 5'- gGGCaugGUCGcCGCCGUCGCcaggGCaagGCUg -3' miRNA: 3'- gCCGa--CGGCaGUGGCAGCGa---CGa--CGA- -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 77696 | 0.67 | 0.764094 |
Target: 5'- aCGGCggcauccucucgGCCGUgGCCccGUCGUcgGCUGCc -3' miRNA: 3'- -GCCGa-----------CGGCAgUGG--CAGCGa-CGACGa -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 166935 | 0.67 | 0.755082 |
Target: 5'- aCGGgaUGCUGUCGcagcucauccgcuacCCGUCGCUacggcaccagcaacaGCUGCUa -3' miRNA: 3'- -GCCg-ACGGCAGU---------------GGCAGCGA---------------CGACGA- -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 143161 | 0.67 | 0.756892 |
Target: 5'- cCGGCUgauggcGCCGcUCuccaagggAUCGcCGCUGCUGCg -3' miRNA: 3'- -GCCGA------CGGC-AG--------UGGCaGCGACGACGa -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 70588 | 0.67 | 0.756892 |
Target: 5'- -uGCUGgacggCGUCACCGccUCGCUGCUGg- -3' miRNA: 3'- gcCGACg----GCAGUGGC--AGCGACGACga -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 164636 | 0.67 | 0.747802 |
Target: 5'- gGGUUaCCGUCGCUggagGUCGCUGUgGCg -3' miRNA: 3'- gCCGAcGGCAGUGG----CAGCGACGaCGa -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 113499 | 0.67 | 0.765884 |
Target: 5'- uGGCccucaugGCCGUCACCGagagcgugCGCaGCgGCUg -3' miRNA: 3'- gCCGa------CGGCAGUGGCa-------GCGaCGaCGA- -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 223780 | 0.67 | 0.756892 |
Target: 5'- uCGGC-GCCGUUACCGcCGUggGCcGCc -3' miRNA: 3'- -GCCGaCGGCAGUGGCaGCGa-CGaCGa -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 192480 | 0.67 | 0.738622 |
Target: 5'- aCGGCggucgGCUGaUCACCGUguccaCGCUGguaCUGCUc -3' miRNA: 3'- -GCCGa----CGGC-AGUGGCA-----GCGAC---GACGA- -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 96771 | 0.67 | 0.729358 |
Target: 5'- aCGGUcGCCGUCGCCGcCgGCaGCaGCg -3' miRNA: 3'- -GCCGaCGGCAGUGGCaG-CGaCGaCGa -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 180341 | 0.67 | 0.738622 |
Target: 5'- uGGUuucUGCUaGUgGCCGUCGUgacggUGCUGCUc -3' miRNA: 3'- gCCG---ACGG-CAgUGGCAGCG-----ACGACGA- -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 50278 | 0.67 | 0.765884 |
Target: 5'- -uGCaGCCGgguCCGcCGCUGCUGCc -3' miRNA: 3'- gcCGaCGGCaguGGCaGCGACGACGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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