miRNA display CGI


Results 21 - 40 of 160 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13935 5' -60.7 NC_003521.1 + 42612 0.69 0.653191
Target:  5'- aCGGCcGCCGgcggCGCCGUCGCcGCc--- -3'
miRNA:   3'- -GCCGaCGGCa---GUGGCAGCGaCGacga -5'
13935 5' -60.7 NC_003521.1 + 43871 0.7 0.576014
Target:  5'- cCGGCUcccggGCCGUCGCCcaCGCuaccggUGCUGCc -3'
miRNA:   3'- -GCCGA-----CGGCAGUGGcaGCG------ACGACGa -5'
13935 5' -60.7 NC_003521.1 + 43943 0.69 0.624178
Target:  5'- uCGGCga-CGaUCACCGgcgGCUGCUGCUc -3'
miRNA:   3'- -GCCGacgGC-AGUGGCag-CGACGACGA- -5'
13935 5' -60.7 NC_003521.1 + 43955 0.66 0.808264
Target:  5'- gGGUcGuuGUCGUCGUCuccuccuGCUGCUGCUc -3'
miRNA:   3'- gCCGaCggCAGUGGCAG-------CGACGACGA- -5'
13935 5' -60.7 NC_003521.1 + 45888 0.71 0.538085
Target:  5'- gCGGCggugGCCGUCugCGUCgGC-GCUGa- -3'
miRNA:   3'- -GCCGa---CGGCAGugGCAG-CGaCGACga -5'
13935 5' -60.7 NC_003521.1 + 49824 0.67 0.738622
Target:  5'- aGGCUGCCcacGUcCACCuG-CGCcUGCUGCc -3'
miRNA:   3'- gCCGACGG---CA-GUGG-CaGCG-ACGACGa -5'
13935 5' -60.7 NC_003521.1 + 50278 0.67 0.765884
Target:  5'- -uGCaGCCGgguCCGcCGCUGCUGCc -3'
miRNA:   3'- gcCGaCGGCaguGGCaGCGACGACGa -5'
13935 5' -60.7 NC_003521.1 + 52458 0.69 0.662841
Target:  5'- gCGGCUGUCGcguuaucccuuUCACCGUCGaaGCaacgGCg -3'
miRNA:   3'- -GCCGACGGC-----------AGUGGCAGCgaCGa---CGa -5'
13935 5' -60.7 NC_003521.1 + 53647 0.66 0.79219
Target:  5'- aGGCggGCCGUCuCCGcaCGUUGCUuccGCUc -3'
miRNA:   3'- gCCGa-CGGCAGuGGCa-GCGACGA---CGA- -5'
13935 5' -60.7 NC_003521.1 + 54122 0.67 0.765884
Target:  5'- cCGGa-GCCGUCGUCGU-GCaUGCUGCUa -3'
miRNA:   3'- -GCCgaCGGCAGUGGCAgCG-ACGACGA- -5'
13935 5' -60.7 NC_003521.1 + 55506 0.66 0.817337
Target:  5'- gGGCUcGCCGgcgaGCCGcUCGggGCUGUa -3'
miRNA:   3'- gCCGA-CGGCag--UGGC-AGCgaCGACGa -5'
13935 5' -60.7 NC_003521.1 + 56019 0.66 0.79219
Target:  5'- -cGCcgGCCG-CGCCuGUCGCUGCcGCc -3'
miRNA:   3'- gcCGa-CGGCaGUGG-CAGCGACGaCGa -5'
13935 5' -60.7 NC_003521.1 + 56449 0.7 0.604853
Target:  5'- gCGGCUGaUgGUCAacCUGUCGC-GCUGCg -3'
miRNA:   3'- -GCCGAC-GgCAGU--GGCAGCGaCGACGa -5'
13935 5' -60.7 NC_003521.1 + 57842 0.72 0.474027
Target:  5'- cCGGUgacGCCGaaCGCCGUCGCUGCUa-- -3'
miRNA:   3'- -GCCGa--CGGCa-GUGGCAGCGACGAcga -5'
13935 5' -60.7 NC_003521.1 + 58995 0.71 0.515739
Target:  5'- uGGCUGCUG-CACCGcCGCcuggagacgguggGCUGCg -3'
miRNA:   3'- gCCGACGGCaGUGGCaGCGa------------CGACGa -5'
13935 5' -60.7 NC_003521.1 + 60283 0.71 0.519438
Target:  5'- aGGUgagGCCGgUGCUGUCGC-GCUGCUg -3'
miRNA:   3'- gCCGa--CGGCaGUGGCAGCGaCGACGA- -5'
13935 5' -60.7 NC_003521.1 + 60585 0.69 0.653191
Target:  5'- cCGGCUGCaucagCGCCGUCuGCgcguaggcGCUGCa -3'
miRNA:   3'- -GCCGACGgca--GUGGCAG-CGa-------CGACGa -5'
13935 5' -60.7 NC_003521.1 + 63422 0.7 0.604853
Target:  5'- gGGCgGCgCGUCgAUCGUCagcccgcgcaGCUGCUGCUc -3'
miRNA:   3'- gCCGaCG-GCAG-UGGCAG----------CGACGACGA- -5'
13935 5' -60.7 NC_003521.1 + 64149 0.67 0.774769
Target:  5'- gGGCaacGCCGUCAaCGaguacUCGCUGCUGg- -3'
miRNA:   3'- gCCGa--CGGCAGUgGC-----AGCGACGACga -5'
13935 5' -60.7 NC_003521.1 + 64532 0.66 0.79219
Target:  5'- uGcGCgacgacGCCGaCGCcCGUCuGCUGCUGCUc -3'
miRNA:   3'- gC-CGa-----CGGCaGUG-GCAG-CGACGACGA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.