miRNA display CGI


Results 21 - 40 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13935 5' -60.7 NC_003521.1 + 167572 0.71 0.491965
Target:  5'- aCGGCgcucGUCGUCA-CGcCGCUGCUGUUg -3'
miRNA:   3'- -GCCGa---CGGCAGUgGCaGCGACGACGA- -5'
13935 5' -60.7 NC_003521.1 + 238653 0.72 0.482956
Target:  5'- gCGGUUGCUgcaacuGUUGCaGUUGCUGCUGCUg -3'
miRNA:   3'- -GCCGACGG------CAGUGgCAGCGACGACGA- -5'
13935 5' -60.7 NC_003521.1 + 168610 0.75 0.308489
Target:  5'- gGGCUGCUGggcgugCGCCaucugcuGUUGCUGCUGCg -3'
miRNA:   3'- gCCGACGGCa-----GUGG-------CAGCGACGACGa -5'
13935 5' -60.7 NC_003521.1 + 30221 0.76 0.295943
Target:  5'- uCGGCcgGCCGUUGgCGUCGC-GCUGCa -3'
miRNA:   3'- -GCCGa-CGGCAGUgGCAGCGaCGACGa -5'
13935 5' -60.7 NC_003521.1 + 221931 0.76 0.276949
Target:  5'- gGGCUGCCGcggCGCCucguccucGUCGCUGCUcaGCUg -3'
miRNA:   3'- gCCGACGGCa--GUGG--------CAGCGACGA--CGA- -5'
13935 5' -60.7 NC_003521.1 + 166796 0.76 0.270837
Target:  5'- uCGGacgaUGCCGcCGCCGcUGCUGCUGCg -3'
miRNA:   3'- -GCCg---ACGGCaGUGGCaGCGACGACGa -5'
13935 5' -60.7 NC_003521.1 + 80027 0.77 0.253153
Target:  5'- gCGGCUGCUGUUucUUGUUGCUGCUGUUg -3'
miRNA:   3'- -GCCGACGGCAGu-GGCAGCGACGACGA- -5'
13935 5' -60.7 NC_003521.1 + 122877 0.77 0.23643
Target:  5'- uGGUUgacgacGCCGUCACCGcucgCGUUGCUGCUa -3'
miRNA:   3'- gCCGA------CGGCAGUGGCa---GCGACGACGA- -5'
13935 5' -60.7 NC_003521.1 + 164452 0.81 0.136983
Target:  5'- gCGGCcgcgGCCGUCACgGUCGCcGCUGCc -3'
miRNA:   3'- -GCCGa---CGGCAGUGgCAGCGaCGACGa -5'
13935 5' -60.7 NC_003521.1 + 168947 0.82 0.124194
Target:  5'- gGGCcgccGCUGUCGCCGUCGCUcccGCUGCUg -3'
miRNA:   3'- gCCGa---CGGCAGUGGCAGCGA---CGACGA- -5'
13935 5' -60.7 NC_003521.1 + 129970 0.75 0.336929
Target:  5'- -cGCUGCucuaCGUgCACCGUCGCUGCcGCUg -3'
miRNA:   3'- gcCGACG----GCA-GUGGCAGCGACGaCGA- -5'
13935 5' -60.7 NC_003521.1 + 2724 0.74 0.366473
Target:  5'- gGGagcGCCGUCACCGccucgcuggcUgGCUGCUGCUa -3'
miRNA:   3'- gCCga-CGGCAGUGGC----------AgCGACGACGA- -5'
13935 5' -60.7 NC_003521.1 + 57842 0.72 0.474027
Target:  5'- cCGGUgacGCCGaaCGCCGUCGCUGCUa-- -3'
miRNA:   3'- -GCCGa--CGGCa-GUGGCAGCGACGAcga -5'
13935 5' -60.7 NC_003521.1 + 30398 0.72 0.474027
Target:  5'- -cGCUGCCGUCGCCGcccaCGCcgaccacGCUGCg -3'
miRNA:   3'- gcCGACGGCAGUGGCa---GCGa------CGACGa -5'
13935 5' -60.7 NC_003521.1 + 18747 0.72 0.474027
Target:  5'- uGGCgGCgGUggCGCCGacgggUCGCUGCUGCg -3'
miRNA:   3'- gCCGaCGgCA--GUGGC-----AGCGACGACGa -5'
13935 5' -60.7 NC_003521.1 + 18850 0.72 0.456423
Target:  5'- gCGGCUGUCGUCACCuaaaaUGCUGCc -3'
miRNA:   3'- -GCCGACGGCAGUGGcagcgACGACGa -5'
13935 5' -60.7 NC_003521.1 + 201792 0.73 0.405836
Target:  5'- uCGGC-GCCacaccCGCCGUCGCUGCUGaCg -3'
miRNA:   3'- -GCCGaCGGca---GUGGCAGCGACGAC-Ga -5'
13935 5' -60.7 NC_003521.1 + 164487 0.73 0.405836
Target:  5'- -cGCaGCCGUCACCGUCGCcuccGCaGCUg -3'
miRNA:   3'- gcCGaCGGCAGUGGCAGCGa---CGaCGA- -5'
13935 5' -60.7 NC_003521.1 + 79634 0.73 0.405836
Target:  5'- gCGGC-GCC-UCGgCGUCGuCUGCUGCUg -3'
miRNA:   3'- -GCCGaCGGcAGUgGCAGC-GACGACGA- -5'
13935 5' -60.7 NC_003521.1 + 149808 0.73 0.397752
Target:  5'- aCGGCcgGCCGUgACCGaC-CUGCUGCa -3'
miRNA:   3'- -GCCGa-CGGCAgUGGCaGcGACGACGa -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.