Results 21 - 40 of 160 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13935 | 5' | -60.7 | NC_003521.1 | + | 167572 | 0.71 | 0.491965 |
Target: 5'- aCGGCgcucGUCGUCA-CGcCGCUGCUGUUg -3' miRNA: 3'- -GCCGa---CGGCAGUgGCaGCGACGACGA- -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 238653 | 0.72 | 0.482956 |
Target: 5'- gCGGUUGCUgcaacuGUUGCaGUUGCUGCUGCUg -3' miRNA: 3'- -GCCGACGG------CAGUGgCAGCGACGACGA- -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 168610 | 0.75 | 0.308489 |
Target: 5'- gGGCUGCUGggcgugCGCCaucugcuGUUGCUGCUGCg -3' miRNA: 3'- gCCGACGGCa-----GUGG-------CAGCGACGACGa -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 30221 | 0.76 | 0.295943 |
Target: 5'- uCGGCcgGCCGUUGgCGUCGC-GCUGCa -3' miRNA: 3'- -GCCGa-CGGCAGUgGCAGCGaCGACGa -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 221931 | 0.76 | 0.276949 |
Target: 5'- gGGCUGCCGcggCGCCucguccucGUCGCUGCUcaGCUg -3' miRNA: 3'- gCCGACGGCa--GUGG--------CAGCGACGA--CGA- -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 166796 | 0.76 | 0.270837 |
Target: 5'- uCGGacgaUGCCGcCGCCGcUGCUGCUGCg -3' miRNA: 3'- -GCCg---ACGGCaGUGGCaGCGACGACGa -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 80027 | 0.77 | 0.253153 |
Target: 5'- gCGGCUGCUGUUucUUGUUGCUGCUGUUg -3' miRNA: 3'- -GCCGACGGCAGu-GGCAGCGACGACGA- -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 122877 | 0.77 | 0.23643 |
Target: 5'- uGGUUgacgacGCCGUCACCGcucgCGUUGCUGCUa -3' miRNA: 3'- gCCGA------CGGCAGUGGCa---GCGACGACGA- -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 164452 | 0.81 | 0.136983 |
Target: 5'- gCGGCcgcgGCCGUCACgGUCGCcGCUGCc -3' miRNA: 3'- -GCCGa---CGGCAGUGgCAGCGaCGACGa -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 168947 | 0.82 | 0.124194 |
Target: 5'- gGGCcgccGCUGUCGCCGUCGCUcccGCUGCUg -3' miRNA: 3'- gCCGa---CGGCAGUGGCAGCGA---CGACGA- -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 129970 | 0.75 | 0.336929 |
Target: 5'- -cGCUGCucuaCGUgCACCGUCGCUGCcGCUg -3' miRNA: 3'- gcCGACG----GCA-GUGGCAGCGACGaCGA- -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 2724 | 0.74 | 0.366473 |
Target: 5'- gGGagcGCCGUCACCGccucgcuggcUgGCUGCUGCUa -3' miRNA: 3'- gCCga-CGGCAGUGGC----------AgCGACGACGA- -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 57842 | 0.72 | 0.474027 |
Target: 5'- cCGGUgacGCCGaaCGCCGUCGCUGCUa-- -3' miRNA: 3'- -GCCGa--CGGCa-GUGGCAGCGACGAcga -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 30398 | 0.72 | 0.474027 |
Target: 5'- -cGCUGCCGUCGCCGcccaCGCcgaccacGCUGCg -3' miRNA: 3'- gcCGACGGCAGUGGCa---GCGa------CGACGa -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 18747 | 0.72 | 0.474027 |
Target: 5'- uGGCgGCgGUggCGCCGacgggUCGCUGCUGCg -3' miRNA: 3'- gCCGaCGgCA--GUGGC-----AGCGACGACGa -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 18850 | 0.72 | 0.456423 |
Target: 5'- gCGGCUGUCGUCACCuaaaaUGCUGCc -3' miRNA: 3'- -GCCGACGGCAGUGGcagcgACGACGa -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 201792 | 0.73 | 0.405836 |
Target: 5'- uCGGC-GCCacaccCGCCGUCGCUGCUGaCg -3' miRNA: 3'- -GCCGaCGGca---GUGGCAGCGACGAC-Ga -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 164487 | 0.73 | 0.405836 |
Target: 5'- -cGCaGCCGUCACCGUCGCcuccGCaGCUg -3' miRNA: 3'- gcCGaCGGCAGUGGCAGCGa---CGaCGA- -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 79634 | 0.73 | 0.405836 |
Target: 5'- gCGGC-GCC-UCGgCGUCGuCUGCUGCUg -3' miRNA: 3'- -GCCGaCGGcAGUgGCAGC-GACGACGA- -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 149808 | 0.73 | 0.397752 |
Target: 5'- aCGGCcgGCCGUgACCGaC-CUGCUGCa -3' miRNA: 3'- -GCCGa-CGGCAgUGGCaGcGACGACGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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