miRNA display CGI


Results 41 - 60 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13935 5' -60.7 NC_003521.1 + 180341 0.67 0.738622
Target:  5'- uGGUuucUGCUaGUgGCCGUCGUgacggUGCUGCUc -3'
miRNA:   3'- gCCG---ACGG-CAgUGGCAGCG-----ACGACGA- -5'
13935 5' -60.7 NC_003521.1 + 49824 0.67 0.738622
Target:  5'- aGGCUGCCcacGUcCACCuG-CGCcUGCUGCc -3'
miRNA:   3'- gCCGACGG---CA-GUGG-CaGCG-ACGACGa -5'
13935 5' -60.7 NC_003521.1 + 142104 0.67 0.738622
Target:  5'- cCGGgaGCCGUagGCgCGUCGCaggaacuggUGCUGUUg -3'
miRNA:   3'- -GCCgaCGGCAg-UG-GCAGCG---------ACGACGA- -5'
13935 5' -60.7 NC_003521.1 + 160776 0.67 0.738622
Target:  5'- aGGCUGCCGcccccuccUC-CCGcCGCgGuCUGCUg -3'
miRNA:   3'- gCCGACGGC--------AGuGGCaGCGaC-GACGA- -5'
13935 5' -60.7 NC_003521.1 + 234087 0.67 0.738622
Target:  5'- aCGGCgGUgGaUACCGUacuugggcuggCGCUGCUGCa -3'
miRNA:   3'- -GCCGaCGgCaGUGGCA-----------GCGACGACGa -5'
13935 5' -60.7 NC_003521.1 + 119965 0.67 0.738622
Target:  5'- aGGCUGgUGgaCGCCGUggaGCUGCUGUc -3'
miRNA:   3'- gCCGACgGCa-GUGGCAg--CGACGACGa -5'
13935 5' -60.7 NC_003521.1 + 96771 0.67 0.729358
Target:  5'- aCGGUcGCCGUCGCCGcCgGCaGCaGCg -3'
miRNA:   3'- -GCCGaCGGCAGUGGCaG-CGaCGaCGa -5'
13935 5' -60.7 NC_003521.1 + 220841 0.67 0.729358
Target:  5'- aCGGCUguuuucauaaGCCGUCGCCGguaCGCUcaGCggagUGCg -3'
miRNA:   3'- -GCCGA----------CGGCAGUGGCa--GCGA--CG----ACGa -5'
13935 5' -60.7 NC_003521.1 + 188154 0.67 0.729358
Target:  5'- -cGCUGCCGgUGCCGcUGCUGCcGCUc -3'
miRNA:   3'- gcCGACGGCaGUGGCaGCGACGaCGA- -5'
13935 5' -60.7 NC_003521.1 + 69563 0.68 0.720019
Target:  5'- aCGGC-GCCGccCugUGUCGggGCUGCg -3'
miRNA:   3'- -GCCGaCGGCa-GugGCAGCgaCGACGa -5'
13935 5' -60.7 NC_003521.1 + 191401 0.68 0.710613
Target:  5'- gCGGC-GCUGUCGCCGUCaGC--CUGCc -3'
miRNA:   3'- -GCCGaCGGCAGUGGCAG-CGacGACGa -5'
13935 5' -60.7 NC_003521.1 + 124146 0.68 0.710613
Target:  5'- -cGCUGCCucCGCCGcCGCUGCcgUGCa -3'
miRNA:   3'- gcCGACGGcaGUGGCaGCGACG--ACGa -5'
13935 5' -60.7 NC_003521.1 + 11439 0.68 0.710613
Target:  5'- gGuGCUGCC-UCACCGggaucauccUCgGCUGCUGUUg -3'
miRNA:   3'- gC-CGACGGcAGUGGC---------AG-CGACGACGA- -5'
13935 5' -60.7 NC_003521.1 + 28534 0.68 0.710613
Target:  5'- uGGCUGCUGUCAUCGcCGCcGUguuccucucgGCg -3'
miRNA:   3'- gCCGACGGCAGUGGCaGCGaCGa---------CGa -5'
13935 5' -60.7 NC_003521.1 + 79549 0.68 0.710613
Target:  5'- -cGCUGCUGcuacuguugcCGCCGUCGCUGCU-CUg -3'
miRNA:   3'- gcCGACGGCa---------GUGGCAGCGACGAcGA- -5'
13935 5' -60.7 NC_003521.1 + 134516 0.68 0.701147
Target:  5'- aGGCgaugcgcacgGCCGcCGCCugGUUGCUGUUGCc -3'
miRNA:   3'- gCCGa---------CGGCaGUGG--CAGCGACGACGa -5'
13935 5' -60.7 NC_003521.1 + 127027 0.68 0.701147
Target:  5'- gGGcCUGCCGgacuUCA-CGUCGCUGCaguucgUGCUg -3'
miRNA:   3'- gCC-GACGGC----AGUgGCAGCGACG------ACGA- -5'
13935 5' -60.7 NC_003521.1 + 218343 0.68 0.701147
Target:  5'- cCGGC-GCCGcCGCC-UCGCUG-UGCUu -3'
miRNA:   3'- -GCCGaCGGCaGUGGcAGCGACgACGA- -5'
13935 5' -60.7 NC_003521.1 + 223836 0.68 0.701147
Target:  5'- gGGCgccUGCUGUCcCUG-CgGCUGCUGCUg -3'
miRNA:   3'- gCCG---ACGGCAGuGGCaG-CGACGACGA- -5'
13935 5' -60.7 NC_003521.1 + 65988 0.68 0.69163
Target:  5'- uGGCcacGCCGgaCACCaaGUCGCUGCUGg- -3'
miRNA:   3'- gCCGa--CGGCa-GUGG--CAGCGACGACga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.