miRNA display CGI


Results 1 - 20 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13936 3' -61.2 NC_003521.1 + 93650 0.66 0.806664
Target:  5'- -uGGGGGGUCCgGGUUGCCaaaauuccccuGucccGGACCCc -3'
miRNA:   3'- auUUUCCCGGGgCCAGCGG-----------C----CCUGGG- -5'
13936 3' -61.2 NC_003521.1 + 75981 0.66 0.781262
Target:  5'- gAGGAGcGGCCC---UCGCCGGGcGCCg -3'
miRNA:   3'- aUUUUC-CCGGGgccAGCGGCCC-UGGg -5'
13936 3' -61.2 NC_003521.1 + 100916 0.66 0.814863
Target:  5'- ----uGGGCUCCGcucgCGUCGGGAuuUCCg -3'
miRNA:   3'- auuuuCCCGGGGCca--GCGGCCCU--GGG- -5'
13936 3' -61.2 NC_003521.1 + 215396 0.66 0.798326
Target:  5'- aGGAAGGGCaCCaggaaGGUgagGCUGGGcgaGCCCu -3'
miRNA:   3'- aUUUUCCCG-GGg----CCAg--CGGCCC---UGGG- -5'
13936 3' -61.2 NC_003521.1 + 68826 0.66 0.780396
Target:  5'- ----cGGGCCCUGGcacaGUCGGucaacgaGACCCu -3'
miRNA:   3'- auuuuCCCGGGGCCag--CGGCC-------CUGGG- -5'
13936 3' -61.2 NC_003521.1 + 22599 0.66 0.776049
Target:  5'- -----cGGCCCCugcGGUCGCCugaccuccguugcccGGGACaCCc -3'
miRNA:   3'- auuuucCCGGGG---CCAGCGG---------------CCCUG-GG- -5'
13936 3' -61.2 NC_003521.1 + 137476 0.66 0.781262
Target:  5'- gUGGAAGGGCgCCGGcgUGUCGcGGCgCCg -3'
miRNA:   3'- -AUUUUCCCGgGGCCa-GCGGCcCUG-GG- -5'
13936 3' -61.2 NC_003521.1 + 142250 0.66 0.805836
Target:  5'- ----cGGGCCCgcuccuccuCGGcCgacucgggcucggGCUGGGACCCg -3'
miRNA:   3'- auuuuCCCGGG---------GCCaG-------------CGGCCCUGGG- -5'
13936 3' -61.2 NC_003521.1 + 172772 0.66 0.798326
Target:  5'- ----uGGcuGCCaCCGGgggCGCCGcGGACCa -3'
miRNA:   3'- auuuuCC--CGG-GGCCa--GCGGC-CCUGGg -5'
13936 3' -61.2 NC_003521.1 + 186639 0.66 0.789856
Target:  5'- cGGucGGGCUgcuccuCCGGUUGaCacaGGGGCCCc -3'
miRNA:   3'- aUUuuCCCGG------GGCCAGC-Gg--CCCUGGG- -5'
13936 3' -61.2 NC_003521.1 + 179480 0.66 0.789856
Target:  5'- cUGAcGGGuacGCUCCGGcagCGCCGGGGaacacguguCCCa -3'
miRNA:   3'- -AUUuUCC---CGGGGCCa--GCGGCCCU---------GGG- -5'
13936 3' -61.2 NC_003521.1 + 189951 0.66 0.772551
Target:  5'- ----cGGGCCgCCGaGcCGUuccucaGGGACCCg -3'
miRNA:   3'- auuuuCCCGG-GGC-CaGCGg-----CCCUGGG- -5'
13936 3' -61.2 NC_003521.1 + 168945 0.66 0.806664
Target:  5'- ---cAGGGCCgCCGcuGUCGCCGucGCUCc -3'
miRNA:   3'- auuuUCCCGG-GGC--CAGCGGCccUGGG- -5'
13936 3' -61.2 NC_003521.1 + 124205 0.66 0.772551
Target:  5'- gUGAgcGGGCCCUuucuGGcccgCGaCCGGG-CCCg -3'
miRNA:   3'- -AUUuuCCCGGGG----CCa---GC-GGCCCuGGG- -5'
13936 3' -61.2 NC_003521.1 + 39774 0.66 0.798326
Target:  5'- --cAGGGGCUcguaguccagguCCaGUCGCUgcuagcuuucguGGGACCCg -3'
miRNA:   3'- auuUUCCCGG------------GGcCAGCGG------------CCCUGGG- -5'
13936 3' -61.2 NC_003521.1 + 45998 0.66 0.822918
Target:  5'- ---cAGGGUCUCGGccaguccgUCGCgGGGGUCCu -3'
miRNA:   3'- auuuUCCCGGGGCC--------AGCGgCCCUGGG- -5'
13936 3' -61.2 NC_003521.1 + 113745 0.66 0.772551
Target:  5'- ----uGGGCCgCCucUCGUCGGuGGCCCu -3'
miRNA:   3'- auuuuCCCGG-GGccAGCGGCC-CUGGG- -5'
13936 3' -61.2 NC_003521.1 + 4547 0.66 0.777792
Target:  5'- ---cAGGGuCCCCGGggagucacuacgGCCGGGGCa- -3'
miRNA:   3'- auuuUCCC-GGGGCCag----------CGGCCCUGgg -5'
13936 3' -61.2 NC_003521.1 + 29421 0.66 0.784714
Target:  5'- ----cGGGCCCCGGUgacagcuacaaccaGCgCGuGGGCCa -3'
miRNA:   3'- auuuuCCCGGGGCCAg-------------CG-GC-CCUGGg -5'
13936 3' -61.2 NC_003521.1 + 74648 0.66 0.781262
Target:  5'- ----cGGGaCCCUGGagCGCCGcucGGCCCu -3'
miRNA:   3'- auuuuCCC-GGGGCCa-GCGGCc--CUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.