miRNA display CGI


Results 1 - 20 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13936 3' -61.2 NC_003521.1 + 6099 1.1 0.001456
Target:  5'- aUAAAAGGGCCCCGGUCGCCGGGACCCg -3'
miRNA:   3'- -AUUUUCCCGGGGCCAGCGGCCCUGGG- -5'
13936 3' -61.2 NC_003521.1 + 5832 0.81 0.129432
Target:  5'- ----cGGGUCCCGG-CGaCCGGGGCCCu -3'
miRNA:   3'- auuuuCCCGGGGCCaGC-GGCCCUGGG- -5'
13936 3' -61.2 NC_003521.1 + 127835 0.79 0.172568
Target:  5'- gUGGAAGGGCCCCGGcgccagccCGUCGGGcagguuGCCCa -3'
miRNA:   3'- -AUUUUCCCGGGGCCa-------GCGGCCC------UGGG- -5'
13936 3' -61.2 NC_003521.1 + 68691 0.78 0.203309
Target:  5'- -uGAGGGGCgCCGGcggagccgUCGCCgcGGGACCCg -3'
miRNA:   3'- auUUUCCCGgGGCC--------AGCGG--CCCUGGG- -5'
13936 3' -61.2 NC_003521.1 + 225959 0.77 0.228085
Target:  5'- --cGAGGGCgCCUGGgagCGCCuGGACCCc -3'
miRNA:   3'- auuUUCCCG-GGGCCa--GCGGcCCUGGG- -5'
13936 3' -61.2 NC_003521.1 + 61831 0.77 0.244146
Target:  5'- -cGAGGGGCCCUGGgagggCGCCGcGGAaCCg -3'
miRNA:   3'- auUUUCCCGGGGCCa----GCGGC-CCUgGG- -5'
13936 3' -61.2 NC_003521.1 + 153082 0.77 0.249705
Target:  5'- ----cGGGgCCCGG--GCCGGGGCCCa -3'
miRNA:   3'- auuuuCCCgGGGCCagCGGCCCUGGG- -5'
13936 3' -61.2 NC_003521.1 + 36292 0.77 0.255368
Target:  5'- gAAGAGGGCCaagaCGGUCG-UGGGGCCg -3'
miRNA:   3'- aUUUUCCCGGg---GCCAGCgGCCCUGGg -5'
13936 3' -61.2 NC_003521.1 + 88658 0.77 0.255368
Target:  5'- -cAGAGGGCCgCCaGGUCgguggGCCGGcGGCCCg -3'
miRNA:   3'- auUUUCCCGG-GG-CCAG-----CGGCC-CUGGG- -5'
13936 3' -61.2 NC_003521.1 + 164749 0.75 0.297983
Target:  5'- gAGGGGGGCaUCgCGGUCGCCGGGcgaACCa -3'
miRNA:   3'- aUUUUCCCG-GG-GCCAGCGGCCC---UGGg -5'
13936 3' -61.2 NC_003521.1 + 153342 0.75 0.297983
Target:  5'- ----uGGGCCCCGG-C-CCGGGcCCCg -3'
miRNA:   3'- auuuuCCCGGGGCCaGcGGCCCuGGG- -5'
13936 3' -61.2 NC_003521.1 + 120554 0.75 0.304502
Target:  5'- gGGAAGGGCCCucggcggccggCGGUC-CCGGGggagcGCCCg -3'
miRNA:   3'- aUUUUCCCGGG-----------GCCAGcGGCCC-----UGGG- -5'
13936 3' -61.2 NC_003521.1 + 120285 0.75 0.331671
Target:  5'- ----cGGGaCCgCCGGcCGCCGaGGGCCCu -3'
miRNA:   3'- auuuuCCC-GG-GGCCaGCGGC-CCUGGG- -5'
13936 3' -61.2 NC_003521.1 + 54169 0.74 0.353191
Target:  5'- aAGGGGGGCgCCGGUgGCgGGGGCg- -3'
miRNA:   3'- aUUUUCCCGgGGCCAgCGgCCCUGgg -5'
13936 3' -61.2 NC_003521.1 + 111623 0.74 0.383388
Target:  5'- ------aGUCCCGG-CGCCGGGAUCCg -3'
miRNA:   3'- auuuuccCGGGGCCaGCGGCCCUGGG- -5'
13936 3' -61.2 NC_003521.1 + 85466 0.73 0.3912
Target:  5'- aGAAAGguggucgucguGGUgCCGGUgcccgcgccccCGCCGGGACCCg -3'
miRNA:   3'- aUUUUC-----------CCGgGGCCA-----------GCGGCCCUGGG- -5'
13936 3' -61.2 NC_003521.1 + 123197 0.73 0.3912
Target:  5'- --cAGGcGGaacgacaCCgGGUCGCUGGGACCCu -3'
miRNA:   3'- auuUUC-CCg------GGgCCAGCGGCCCUGGG- -5'
13936 3' -61.2 NC_003521.1 + 137541 0.73 0.399116
Target:  5'- ------aGCUCCaGGUCGCUGGGGCCCc -3'
miRNA:   3'- auuuuccCGGGG-CCAGCGGCCCUGGG- -5'
13936 3' -61.2 NC_003521.1 + 154695 0.73 0.399116
Target:  5'- aAGAAGGGCCagCGGUCGaCgCGGGggacgcgcguGCCCg -3'
miRNA:   3'- aUUUUCCCGGg-GCCAGC-G-GCCC----------UGGG- -5'
13936 3' -61.2 NC_003521.1 + 150739 0.73 0.406327
Target:  5'- -uGAAGGGCCCCaccaGGcgcUCGCCGccccagaccaggaGGACCCc -3'
miRNA:   3'- auUUUCCCGGGG----CC---AGCGGC-------------CCUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.