miRNA display CGI


Results 1 - 20 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13936 3' -61.2 NC_003521.1 + 111364 0.7 0.58516
Target:  5'- ----cGGaUCCCGG-CGCCGGGACUa -3'
miRNA:   3'- auuuuCCcGGGGCCaGCGGCCCUGGg -5'
13936 3' -61.2 NC_003521.1 + 150488 0.71 0.528879
Target:  5'- ---uGGGGCCCuucagcuuuuaCGG-CGCCggcGGGGCCCu -3'
miRNA:   3'- auuuUCCCGGG-----------GCCaGCGG---CCCUGGG- -5'
13936 3' -61.2 NC_003521.1 + 129826 0.7 0.547451
Target:  5'- ----uGGGCCgCCuGcUGCUGGGGCCCg -3'
miRNA:   3'- auuuuCCCGG-GGcCaGCGGCCCUGGG- -5'
13936 3' -61.2 NC_003521.1 + 164935 0.7 0.563397
Target:  5'- ----cGGGCCCCuccuccggcggcucGcGUCGCCGgagaGGGCCCu -3'
miRNA:   3'- auuuuCCCGGGG--------------C-CAGCGGC----CCUGGG- -5'
13936 3' -61.2 NC_003521.1 + 142957 0.7 0.566225
Target:  5'- --cGGGGGCCCCuGGUCuCCcuGGCCCg -3'
miRNA:   3'- auuUUCCCGGGG-CCAGcGGccCUGGG- -5'
13936 3' -61.2 NC_003521.1 + 59226 0.7 0.572835
Target:  5'- ---cGGGGCCCUGGaCGCCcuggaggugaacguGGGGCUg -3'
miRNA:   3'- auuuUCCCGGGGCCaGCGG--------------CCCUGGg -5'
13936 3' -61.2 NC_003521.1 + 3666 0.7 0.575675
Target:  5'- ------uGCCUCGG-CgGCCGGGACCCu -3'
miRNA:   3'- auuuuccCGGGGCCaG-CGGCCCUGGG- -5'
13936 3' -61.2 NC_003521.1 + 91245 0.7 0.575675
Target:  5'- gGAuGGGGCCCuCGGgguccCGuCCGGGACa- -3'
miRNA:   3'- aUUuUCCCGGG-GCCa----GC-GGCCCUGgg -5'
13936 3' -61.2 NC_003521.1 + 6365 0.7 0.58516
Target:  5'- cAGAGGGGCCggucggGGUCGCggaGGGGCgCCg -3'
miRNA:   3'- aUUUUCCCGGgg----CCAGCGg--CCCUG-GG- -5'
13936 3' -61.2 NC_003521.1 + 232827 0.71 0.519679
Target:  5'- ----cGGcgcuGCCCCGGUaccucccccgcCGCCGcGGACCCc -3'
miRNA:   3'- auuuuCC----CGGGGCCA-----------GCGGC-CCUGGG- -5'
13936 3' -61.2 NC_003521.1 + 218484 0.71 0.519679
Target:  5'- ---cAGuGGCCCCGGaCGUCGGGAaaggcgaaCCa -3'
miRNA:   3'- auuuUC-CCGGGGCCaGCGGCCCUg-------GG- -5'
13936 3' -61.2 NC_003521.1 + 46550 0.72 0.465953
Target:  5'- ---cAGGGCCUCG--CGCCGGGugCUg -3'
miRNA:   3'- auuuUCCCGGGGCcaGCGGCCCugGG- -5'
13936 3' -61.2 NC_003521.1 + 127835 0.79 0.172568
Target:  5'- gUGGAAGGGCCCCGGcgccagccCGUCGGGcagguuGCCCa -3'
miRNA:   3'- -AUUUUCCCGGGGCCa-------GCGGCCC------UGGG- -5'
13936 3' -61.2 NC_003521.1 + 61831 0.77 0.244146
Target:  5'- -cGAGGGGCCCUGGgagggCGCCGcGGAaCCg -3'
miRNA:   3'- auUUUCCCGGGGCCa----GCGGC-CCUgGG- -5'
13936 3' -61.2 NC_003521.1 + 153082 0.77 0.249705
Target:  5'- ----cGGGgCCCGG--GCCGGGGCCCa -3'
miRNA:   3'- auuuuCCCgGGGCCagCGGCCCUGGG- -5'
13936 3' -61.2 NC_003521.1 + 88658 0.77 0.255368
Target:  5'- -cAGAGGGCCgCCaGGUCgguggGCCGGcGGCCCg -3'
miRNA:   3'- auUUUCCCGG-GG-CCAG-----CGGCC-CUGGG- -5'
13936 3' -61.2 NC_003521.1 + 164749 0.75 0.297983
Target:  5'- gAGGGGGGCaUCgCGGUCGCCGGGcgaACCa -3'
miRNA:   3'- aUUUUCCCG-GG-GCCAGCGGCCC---UGGg -5'
13936 3' -61.2 NC_003521.1 + 120285 0.75 0.331671
Target:  5'- ----cGGGaCCgCCGGcCGCCGaGGGCCCu -3'
miRNA:   3'- auuuuCCC-GG-GGCCaGCGGC-CCUGGG- -5'
13936 3' -61.2 NC_003521.1 + 123197 0.73 0.3912
Target:  5'- --cAGGcGGaacgacaCCgGGUCGCUGGGACCCu -3'
miRNA:   3'- auuUUC-CCg------GGgCCAGCGGCCCUGGG- -5'
13936 3' -61.2 NC_003521.1 + 85466 0.73 0.3912
Target:  5'- aGAAAGguggucgucguGGUgCCGGUgcccgcgccccCGCCGGGACCCg -3'
miRNA:   3'- aUUUUC-----------CCGgGGCCA-----------GCGGCCCUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.