Results 21 - 40 of 137 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13936 | 3' | -61.2 | NC_003521.1 | + | 215396 | 0.66 | 0.798326 |
Target: 5'- aGGAAGGGCaCCaggaaGGUgagGCUGGGcgaGCCCu -3' miRNA: 3'- aUUUUCCCG-GGg----CCAg--CGGCCC---UGGG- -5' |
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13936 | 3' | -61.2 | NC_003521.1 | + | 4833 | 0.66 | 0.796642 |
Target: 5'- -cGGAGGccggcguguGCCCCGGcCGUagugacuccccgGGGACCCu -3' miRNA: 3'- auUUUCC---------CGGGGCCaGCGg-----------CCCUGGG- -5' |
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13936 | 3' | -61.2 | NC_003521.1 | + | 179480 | 0.66 | 0.789856 |
Target: 5'- cUGAcGGGuacGCUCCGGcagCGCCGGGGaacacguguCCCa -3' miRNA: 3'- -AUUuUCC---CGGGGCCa--GCGGCCCU---------GGG- -5' |
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13936 | 3' | -61.2 | NC_003521.1 | + | 93223 | 0.66 | 0.789856 |
Target: 5'- -uGGGGGGCCCgaUGGU-GCUGGGAUUUu -3' miRNA: 3'- auUUUCCCGGG--GCCAgCGGCCCUGGG- -5' |
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13936 | 3' | -61.2 | NC_003521.1 | + | 92605 | 0.66 | 0.789856 |
Target: 5'- -cGGAGGGUUCCGGgagCGaggcgggcggaUGGGAUCCg -3' miRNA: 3'- auUUUCCCGGGGCCa--GCg----------GCCCUGGG- -5' |
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13936 | 3' | -61.2 | NC_003521.1 | + | 186639 | 0.66 | 0.789856 |
Target: 5'- cGGucGGGCUgcuccuCCGGUUGaCacaGGGGCCCc -3' miRNA: 3'- aUUuuCCCGG------GGCCAGC-Gg--CCCUGGG- -5' |
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13936 | 3' | -61.2 | NC_003521.1 | + | 44132 | 0.66 | 0.789856 |
Target: 5'- ----uGGGCgacggCCCGGgagccgGCCGGGGCgCCu -3' miRNA: 3'- auuuuCCCG-----GGGCCag----CGGCCCUG-GG- -5' |
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13936 | 3' | -61.2 | NC_003521.1 | + | 134040 | 0.66 | 0.787291 |
Target: 5'- -uGGAGGaaaaacuccgccgcGuCCCCGGaaUCGCCGGG-CCUg -3' miRNA: 3'- auUUUCC--------------C-GGGGCC--AGCGGCCCuGGG- -5' |
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13936 | 3' | -61.2 | NC_003521.1 | + | 29421 | 0.66 | 0.784714 |
Target: 5'- ----cGGGCCCCGGUgacagcuacaaccaGCgCGuGGGCCa -3' miRNA: 3'- auuuuCCCGGGGCCAg-------------CG-GC-CCUGGg -5' |
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13936 | 3' | -61.2 | NC_003521.1 | + | 197467 | 0.66 | 0.781262 |
Target: 5'- gGGAAGGaagaaGUCCCG--CGCUGGGACCg -3' miRNA: 3'- aUUUUCC-----CGGGGCcaGCGGCCCUGGg -5' |
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13936 | 3' | -61.2 | NC_003521.1 | + | 122498 | 0.66 | 0.781262 |
Target: 5'- ---uGGcGGCgCUCaGUCGCCGGcACCCg -3' miRNA: 3'- auuuUC-CCG-GGGcCAGCGGCCcUGGG- -5' |
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13936 | 3' | -61.2 | NC_003521.1 | + | 74860 | 0.66 | 0.781262 |
Target: 5'- --cGAGGcGCgCCGGcCG-CGGGACgCCg -3' miRNA: 3'- auuUUCC-CGgGGCCaGCgGCCCUG-GG- -5' |
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13936 | 3' | -61.2 | NC_003521.1 | + | 19605 | 0.66 | 0.781262 |
Target: 5'- --cGAGGGCUCC--UCGCCGGaGCUCc -3' miRNA: 3'- auuUUCCCGGGGccAGCGGCCcUGGG- -5' |
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13936 | 3' | -61.2 | NC_003521.1 | + | 75981 | 0.66 | 0.781262 |
Target: 5'- gAGGAGcGGCCC---UCGCCGGGcGCCg -3' miRNA: 3'- aUUUUC-CCGGGgccAGCGGCCC-UGGg -5' |
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13936 | 3' | -61.2 | NC_003521.1 | + | 137476 | 0.66 | 0.781262 |
Target: 5'- gUGGAAGGGCgCCGGcgUGUCGcGGCgCCg -3' miRNA: 3'- -AUUUUCCCGgGGCCa-GCGGCcCUG-GG- -5' |
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13936 | 3' | -61.2 | NC_003521.1 | + | 74648 | 0.66 | 0.781262 |
Target: 5'- ----cGGGaCCCUGGagCGCCGcucGGCCCu -3' miRNA: 3'- auuuuCCC-GGGGCCa-GCGGCc--CUGGG- -5' |
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13936 | 3' | -61.2 | NC_003521.1 | + | 68826 | 0.66 | 0.780396 |
Target: 5'- ----cGGGCCCUGGcacaGUCGGucaacgaGACCCu -3' miRNA: 3'- auuuuCCCGGGGCCag--CGGCC-------CUGGG- -5' |
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13936 | 3' | -61.2 | NC_003521.1 | + | 4547 | 0.66 | 0.777792 |
Target: 5'- ---cAGGGuCCCCGGggagucacuacgGCCGGGGCa- -3' miRNA: 3'- auuuUCCC-GGGGCCag----------CGGCCCUGgg -5' |
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13936 | 3' | -61.2 | NC_003521.1 | + | 22599 | 0.66 | 0.776049 |
Target: 5'- -----cGGCCCCugcGGUCGCCugaccuccguugcccGGGACaCCc -3' miRNA: 3'- auuuucCCGGGG---CCAGCGG---------------CCCUG-GG- -5' |
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13936 | 3' | -61.2 | NC_003521.1 | + | 113745 | 0.66 | 0.772551 |
Target: 5'- ----uGGGCCgCCucUCGUCGGuGGCCCu -3' miRNA: 3'- auuuuCCCGG-GGccAGCGGCC-CUGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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