miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13936 5' -56.7 NC_003521.1 + 50330 0.65 0.955348
Target:  5'- -aAGGUCUCacgggacucgcucgGGAGGCC-UACgacgcCCUCa -3'
miRNA:   3'- gaUCCAGAG--------------CCUCCGGcAUGa----GGAGa -5'
13936 5' -56.7 NC_003521.1 + 232257 0.66 0.948708
Target:  5'- -aAGGUCUCGGAGaugguguccuguGUCGUACcgUCgUCg -3'
miRNA:   3'- gaUCCAGAGCCUC------------CGGCAUG--AGgAGa -5'
13936 5' -56.7 NC_003521.1 + 76863 0.67 0.930601
Target:  5'- ---cGUcCUCGGAGGCgaccgCGUAgUCCUCUu -3'
miRNA:   3'- gaucCA-GAGCCUCCG-----GCAUgAGGAGA- -5'
13936 5' -56.7 NC_003521.1 + 139911 0.67 0.908949
Target:  5'- --uGGUa--GGAGGCgCGcUGCUCCUCg -3'
miRNA:   3'- gauCCAgagCCUCCG-GC-AUGAGGAGa -5'
13936 5' -56.7 NC_003521.1 + 206419 0.68 0.896802
Target:  5'- cCUGGGcuUCUCGGAGGCCu--UUCCcCg -3'
miRNA:   3'- -GAUCC--AGAGCCUCCGGcauGAGGaGa -5'
13936 5' -56.7 NC_003521.1 + 99698 0.68 0.883797
Target:  5'- -aAGGUCUCGGGcGGCC--GCUUCUg- -3'
miRNA:   3'- gaUCCAGAGCCU-CCGGcaUGAGGAga -5'
13936 5' -56.7 NC_003521.1 + 124021 0.68 0.869963
Target:  5'- -gAGGaCUCGGAcauccGGCCGgcCUUCUCg -3'
miRNA:   3'- gaUCCaGAGCCU-----CCGGCauGAGGAGa -5'
13936 5' -56.7 NC_003521.1 + 147764 0.68 0.862746
Target:  5'- --uGGUgcUUCGG-GGCCGUGUUCCUCa -3'
miRNA:   3'- gauCCA--GAGCCuCCGGCAUGAGGAGa -5'
13936 5' -56.7 NC_003521.1 + 135921 0.69 0.855335
Target:  5'- -cAGGcgaCGGGGGCUGgACUCCUCg -3'
miRNA:   3'- gaUCCagaGCCUCCGGCaUGAGGAGa -5'
13936 5' -56.7 NC_003521.1 + 187663 0.69 0.847736
Target:  5'- -cAGGUCggcaaggugCGGAGGCUGUugccGCUgCUCa -3'
miRNA:   3'- gaUCCAGa--------GCCUCCGGCA----UGAgGAGa -5'
13936 5' -56.7 NC_003521.1 + 50232 0.69 0.839955
Target:  5'- -cAGGUCgCGG-GGCC--ACUCCUCg -3'
miRNA:   3'- gaUCCAGaGCCuCCGGcaUGAGGAGa -5'
13936 5' -56.7 NC_003521.1 + 163128 0.71 0.762866
Target:  5'- gCUGGGUCUUGGAgccGGCCGcggGCUCgccgUUCUg -3'
miRNA:   3'- -GAUCCAGAGCCU---CCGGCa--UGAG----GAGA- -5'
13936 5' -56.7 NC_003521.1 + 13596 0.72 0.68685
Target:  5'- cCUGGGUCUgGuGGGuGCCGgGCUCUUCg -3'
miRNA:   3'- -GAUCCAGAgC-CUC-CGGCaUGAGGAGa -5'
13936 5' -56.7 NC_003521.1 + 223860 0.73 0.627825
Target:  5'- -gAGGUCUCGGAGGCCGagguggagGCgcgCCg-- -3'
miRNA:   3'- gaUCCAGAGCCUCCGGCa-------UGa--GGaga -5'
13936 5' -56.7 NC_003521.1 + 204415 0.74 0.578644
Target:  5'- -gGGGUCUCGGccgagcugAGGCCGgGCUCCg-- -3'
miRNA:   3'- gaUCCAGAGCC--------UCCGGCaUGAGGaga -5'
13936 5' -56.7 NC_003521.1 + 76531 0.75 0.502067
Target:  5'- -gAGGUCUCgcaGGcGGCCGUGCgCCUCUc -3'
miRNA:   3'- gaUCCAGAG---CCuCCGGCAUGaGGAGA- -5'
13936 5' -56.7 NC_003521.1 + 6063 1.07 0.00555
Target:  5'- cCUAGGUCUCGGAGGCCGUACUCCUCUc -3'
miRNA:   3'- -GAUCCAGAGCCUCCGGCAUGAGGAGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.