Results 21 - 40 of 170 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13937 | 3' | -59 | NC_003521.1 | + | 30411 | 0.66 | 0.878203 |
Target: 5'- -gCCCa-CGcCGACCaCGCUGCgGUCCc -3' miRNA: 3'- aaGGGaaGCaGCUGG-GCGAUGgCGGG- -5' |
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13937 | 3' | -59 | NC_003521.1 | + | 143168 | 0.66 | 0.878203 |
Target: 5'- aUCCCguggggGUCgGACCCGgcGCCGCCg -3' miRNA: 3'- aAGGGaag---CAG-CUGGGCgaUGGCGGg -5' |
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13937 | 3' | -59 | NC_003521.1 | + | 128606 | 0.66 | 0.878203 |
Target: 5'- cUUCCC--CGUgGGCCUGUacCUGCCCg -3' miRNA: 3'- -AAGGGaaGCAgCUGGGCGauGGCGGG- -5' |
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13937 | 3' | -59 | NC_003521.1 | + | 122274 | 0.66 | 0.878203 |
Target: 5'- -gCCCga-GUCGACCCcCUGCCaCCg -3' miRNA: 3'- aaGGGaagCAGCUGGGcGAUGGcGGg -5' |
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13937 | 3' | -59 | NC_003521.1 | + | 75687 | 0.66 | 0.878203 |
Target: 5'- ------aCGUCGAUCuugaCGCUGCUGCCCg -3' miRNA: 3'- aagggaaGCAGCUGG----GCGAUGGCGGG- -5' |
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13937 | 3' | -59 | NC_003521.1 | + | 115074 | 0.66 | 0.877525 |
Target: 5'- -gCCCgaCGUCGcccagaaACCCuGCUccugcgccgucGCCGCCCc -3' miRNA: 3'- aaGGGaaGCAGC-------UGGG-CGA-----------UGGCGGG- -5' |
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13937 | 3' | -59 | NC_003521.1 | + | 179106 | 0.66 | 0.871337 |
Target: 5'- uUUCCC---GUCGccCCCGC-GCCGCCUg -3' miRNA: 3'- -AAGGGaagCAGCu-GGGCGaUGGCGGG- -5' |
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13937 | 3' | -59 | NC_003521.1 | + | 125499 | 0.66 | 0.871337 |
Target: 5'- -cCCCgugcgCGUCGuuucuuuuucuCCCGCguUGCCGCCg -3' miRNA: 3'- aaGGGaa---GCAGCu----------GGGCG--AUGGCGGg -5' |
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13937 | 3' | -59 | NC_003521.1 | + | 148695 | 0.66 | 0.871337 |
Target: 5'- -cCCCUggaGcCG-CCgGCgcgGCCGCCCg -3' miRNA: 3'- aaGGGAag-CaGCuGGgCGa--UGGCGGG- -5' |
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13937 | 3' | -59 | NC_003521.1 | + | 146504 | 0.66 | 0.871337 |
Target: 5'- aUCCC-UCGgcCGACCCGCagaaacgGCgGCuCCa -3' miRNA: 3'- aAGGGaAGCa-GCUGGGCGa------UGgCG-GG- -5' |
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13937 | 3' | -59 | NC_003521.1 | + | 41752 | 0.66 | 0.871337 |
Target: 5'- cUCuCCUUCGUCauCCUGCagaCGCCCu -3' miRNA: 3'- aAG-GGAAGCAGcuGGGCGaugGCGGG- -5' |
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13937 | 3' | -59 | NC_003521.1 | + | 105561 | 0.66 | 0.871337 |
Target: 5'- cUCCUcgUCGUCGGCguCCGCcGCCGUg- -3' miRNA: 3'- aAGGGa-AGCAGCUG--GGCGaUGGCGgg -5' |
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13937 | 3' | -59 | NC_003521.1 | + | 67168 | 0.66 | 0.871337 |
Target: 5'- -cCCCUggGU---CCCGCgcaGCCGCCCg -3' miRNA: 3'- aaGGGAagCAgcuGGGCGa--UGGCGGG- -5' |
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13937 | 3' | -59 | NC_003521.1 | + | 190070 | 0.66 | 0.871337 |
Target: 5'- gUCUUcaCGUacguucUGGCCCGCUGCUGCgCCg -3' miRNA: 3'- aAGGGaaGCA------GCUGGGCGAUGGCG-GG- -5' |
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13937 | 3' | -59 | NC_003521.1 | + | 150669 | 0.66 | 0.864279 |
Target: 5'- cUCuCCggCGgCGGCgCCGCUGCUGCUg -3' miRNA: 3'- aAG-GGaaGCaGCUG-GGCGAUGGCGGg -5' |
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13937 | 3' | -59 | NC_003521.1 | + | 97442 | 0.66 | 0.864279 |
Target: 5'- cUCCUccgUCGcuuUCGACCgucguCGUUGCCGCCg -3' miRNA: 3'- aAGGGa--AGC---AGCUGG-----GCGAUGGCGGg -5' |
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13937 | 3' | -59 | NC_003521.1 | + | 63608 | 0.66 | 0.864279 |
Target: 5'- -aCCCagcUGUcCGACCUGCagcGCCGCCUg -3' miRNA: 3'- aaGGGaa-GCA-GCUGGGCGa--UGGCGGG- -5' |
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13937 | 3' | -59 | NC_003521.1 | + | 59073 | 0.66 | 0.864279 |
Target: 5'- -gUCC-UCGUCGGCCggauCGCgcgGCCGCUUg -3' miRNA: 3'- aaGGGaAGCAGCUGG----GCGa--UGGCGGG- -5' |
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13937 | 3' | -59 | NC_003521.1 | + | 80484 | 0.66 | 0.864279 |
Target: 5'- -gCCC-UCGaCGACggaggccaCCGC-GCCGCCCa -3' miRNA: 3'- aaGGGaAGCaGCUG--------GGCGaUGGCGGG- -5' |
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13937 | 3' | -59 | NC_003521.1 | + | 53579 | 0.66 | 0.864279 |
Target: 5'- cUUCaCCUacugCGACCUGCU-CCGCCUg -3' miRNA: 3'- -AAG-GGAagcaGCUGGGCGAuGGCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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