miRNA display CGI


Results 81 - 100 of 246 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13937 5' -52.8 NC_003521.1 + 225799 0.67 0.992459
Target:  5'- cUGGUgACGACGcguucgucgacgcGCGACGGCGccGAgCGg -3'
miRNA:   3'- cACCA-UGCUGC-------------UGCUGUCGCuaCU-GC- -5'
13937 5' -52.8 NC_003521.1 + 129580 0.67 0.992559
Target:  5'- -cGGgcUGGCGGCGGCGGCGc--ACGc -3'
miRNA:   3'- caCCauGCUGCUGCUGUCGCuacUGC- -5'
13937 5' -52.8 NC_003521.1 + 128259 0.67 0.992559
Target:  5'- -aGGUAggcCGugGugGGCAGCGcguugcgGAUGg -3'
miRNA:   3'- caCCAU---GCugCugCUGUCGCua-----CUGC- -5'
13937 5' -52.8 NC_003521.1 + 164058 0.67 0.992559
Target:  5'- -cGGU-UGAgGcCGGCGGUGGUGGCGc -3'
miRNA:   3'- caCCAuGCUgCuGCUGUCGCUACUGC- -5'
13937 5' -52.8 NC_003521.1 + 118101 0.67 0.992559
Target:  5'- -cGG-ACGAgGACGACuGCGA-GGCc -3'
miRNA:   3'- caCCaUGCUgCUGCUGuCGCUaCUGc -5'
13937 5' -52.8 NC_003521.1 + 52228 0.68 0.980562
Target:  5'- -cGGUAgGGCGGCGggcuacaguuggGCAGCGGcaGGCGg -3'
miRNA:   3'- caCCAUgCUGCUGC------------UGUCGCUa-CUGC- -5'
13937 5' -52.8 NC_003521.1 + 74572 0.68 0.980562
Target:  5'- -aGGgcgGCGACGgaGCGGCGGCGc-GGCGu -3'
miRNA:   3'- caCCa--UGCUGC--UGCUGUCGCuaCUGC- -5'
13937 5' -52.8 NC_003521.1 + 77710 0.68 0.980562
Target:  5'- cGUGGcgGCGuuguUGGCGACGGCGGccucggugGGCGg -3'
miRNA:   3'- -CACCa-UGCu---GCUGCUGUCGCUa-------CUGC- -5'
13937 5' -52.8 NC_003521.1 + 145587 0.68 0.980562
Target:  5'- -cGGcACGACG-CGGCGGCcGUGGCc -3'
miRNA:   3'- caCCaUGCUGCuGCUGUCGcUACUGc -5'
13937 5' -52.8 NC_003521.1 + 42698 0.68 0.984413
Target:  5'- uGUGGcggGCGGCGACucCGGCGuuugauuauaAUGACGc -3'
miRNA:   3'- -CACCa--UGCUGCUGcuGUCGC----------UACUGC- -5'
13937 5' -52.8 NC_003521.1 + 186807 0.68 0.982374
Target:  5'- -aGGcGCcACGGCGugGGCGAccagaucUGACGg -3'
miRNA:   3'- caCCaUGcUGCUGCugUCGCU-------ACUGC- -5'
13937 5' -52.8 NC_003521.1 + 57295 0.68 0.980352
Target:  5'- -cGGUGCG-CGGCGACugguggauaAGCGAgggcccgUGGCGc -3'
miRNA:   3'- caCCAUGCuGCUGCUG---------UCGCU-------ACUGC- -5'
13937 5' -52.8 NC_003521.1 + 214012 0.68 0.978389
Target:  5'- -cGGUgacACGACGGCGcuCAG-GGUGGCGu -3'
miRNA:   3'- caCCA---UGCUGCUGCu-GUCgCUACUGC- -5'
13937 5' -52.8 NC_003521.1 + 86979 0.68 0.978389
Target:  5'- -gGGUugucuACGAUGuaggaGGCGGCGGUGAUGa -3'
miRNA:   3'- caCCA-----UGCUGCug---CUGUCGCUACUGC- -5'
13937 5' -52.8 NC_003521.1 + 29400 0.68 0.976042
Target:  5'- -aGGacgACGACGAgGACAGUccgggccccGGUGACa -3'
miRNA:   3'- caCCa--UGCUGCUgCUGUCG---------CUACUGc -5'
13937 5' -52.8 NC_003521.1 + 145870 0.68 0.978389
Target:  5'- -gGGUGCGACuGCaGCAGCGA-GGCc -3'
miRNA:   3'- caCCAUGCUGcUGcUGUCGCUaCUGc -5'
13937 5' -52.8 NC_003521.1 + 43827 0.68 0.978162
Target:  5'- -cGGUgcuugacGCGGCGcCGGCGGCGggGAgCGg -3'
miRNA:   3'- caCCA-------UGCUGCuGCUGUCGCuaCU-GC- -5'
13937 5' -52.8 NC_003521.1 + 227407 0.68 0.978389
Target:  5'- -aGGgugGCGGCGACGACuuGCGAguGCu -3'
miRNA:   3'- caCCa--UGCUGCUGCUGu-CGCUacUGc -5'
13937 5' -52.8 NC_003521.1 + 157498 0.68 0.980562
Target:  5'- uUGGUcgGACcucGCGGCGGCGuAUGACGg -3'
miRNA:   3'- cACCAugCUGc--UGCUGUCGC-UACUGC- -5'
13937 5' -52.8 NC_003521.1 + 190197 0.68 0.982567
Target:  5'- -cGGcccgcACGAUGAUGAUAaaucGCGGUGGCGg -3'
miRNA:   3'- caCCa----UGCUGCUGCUGU----CGCUACUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.