Results 101 - 120 of 246 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
13937 | 5' | -52.8 | NC_003521.1 | + | 118921 | 0.68 | 0.982567 |
Target: 5'- -cGGcGCcGCGGCGugGGCGgcGGCGu -3' miRNA: 3'- caCCaUGcUGCUGCugUCGCuaCUGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 142791 | 0.68 | 0.982567 |
Target: 5'- -cGGUGCcACcaACGGCGGUGGUGGCa -3' miRNA: 3'- caCCAUGcUGc-UGCUGUCGCUACUGc -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 99265 | 0.68 | 0.984413 |
Target: 5'- gGUGGUACcugaggauugaGACGuCGG-AGCGAUGGCu -3' miRNA: 3'- -CACCAUG-----------CUGCuGCUgUCGCUACUGc -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 139787 | 0.68 | 0.984413 |
Target: 5'- -gGGUuuGGCGuCGcccuCGGCGGUGGCGa -3' miRNA: 3'- caCCAugCUGCuGCu---GUCGCUACUGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 209558 | 0.68 | 0.984413 |
Target: 5'- -cGGggUGGCGGCGACGGUGgcGGgGg -3' miRNA: 3'- caCCauGCUGCUGCUGUCGCuaCUgC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 214440 | 0.68 | 0.984413 |
Target: 5'- -cGGUGCugcagaaguuGAUGACGGCGGCGcUGAa- -3' miRNA: 3'- caCCAUG----------CUGCUGCUGUCGCuACUgc -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 74572 | 0.68 | 0.980562 |
Target: 5'- -aGGgcgGCGACGgaGCGGCGGCGc-GGCGu -3' miRNA: 3'- caCCa--UGCUGC--UGCUGUCGCuaCUGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 52228 | 0.68 | 0.980562 |
Target: 5'- -cGGUAgGGCGGCGggcuacaguuggGCAGCGGcaGGCGg -3' miRNA: 3'- caCCAUgCUGCUGC------------UGUCGCUa-CUGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 57295 | 0.68 | 0.980352 |
Target: 5'- -cGGUGCG-CGGCGACugguggauaAGCGAgggcccgUGGCGc -3' miRNA: 3'- caCCAUGCuGCUGCUG---------UCGCU-------ACUGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 214012 | 0.68 | 0.978389 |
Target: 5'- -cGGUgacACGACGGCGcuCAG-GGUGGCGu -3' miRNA: 3'- caCCA---UGCUGCUGCu-GUCgCUACUGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 86979 | 0.68 | 0.978389 |
Target: 5'- -gGGUugucuACGAUGuaggaGGCGGCGGUGAUGa -3' miRNA: 3'- caCCA-----UGCUGCug---CUGUCGCUACUGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 29400 | 0.68 | 0.976042 |
Target: 5'- -aGGacgACGACGAgGACAGUccgggccccGGUGACa -3' miRNA: 3'- caCCa--UGCUGCUgCUGUCG---------CUACUGc -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 6254 | 0.68 | 0.976042 |
Target: 5'- ----gACGACGGgGACGGCGAUaGCGu -3' miRNA: 3'- caccaUGCUGCUgCUGUCGCUAcUGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 123764 | 0.69 | 0.964774 |
Target: 5'- -cGGcagcgGCGACGACGACaccccgccGGCGAcgGACa -3' miRNA: 3'- caCCa----UGCUGCUGCUG--------UCGCUa-CUGc -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 206439 | 0.69 | 0.972985 |
Target: 5'- cGUGGUGuagcgauUGACGugGGCGGgggauugccccauCGGUGGCGu -3' miRNA: 3'- -CACCAU-------GCUGCugCUGUC-------------GCUACUGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 93287 | 0.69 | 0.964774 |
Target: 5'- -gGGUGCGGCuACGGCGGCua-GACGc -3' miRNA: 3'- caCCAUGCUGcUGCUGUCGcuaCUGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 3910 | 0.69 | 0.961458 |
Target: 5'- -aGGca-GACGGCGGCGGCcGUGGCa -3' miRNA: 3'- caCCaugCUGCUGCUGUCGcUACUGc -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 54446 | 0.69 | 0.961458 |
Target: 5'- -nGGcaaguCGACGuCGcGCGGCGGUGGCGg -3' miRNA: 3'- caCCau---GCUGCuGC-UGUCGCUACUGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 89056 | 0.69 | 0.973513 |
Target: 5'- aUGGUGCGggugaacggGCGACaauGACAGCGcgGAUu -3' miRNA: 3'- cACCAUGC---------UGCUG---CUGUCGCuaCUGc -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 200415 | 0.69 | 0.967885 |
Target: 5'- -aGGgcaaACGAUGugGGCGGCGugcUGugGa -3' miRNA: 3'- caCCa---UGCUGCugCUGUCGCu--ACugC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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