miRNA display CGI


Results 121 - 140 of 246 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13937 5' -52.8 NC_003521.1 + 3910 0.69 0.961458
Target:  5'- -aGGca-GACGGCGGCGGCcGUGGCa -3'
miRNA:   3'- caCCaugCUGCUGCUGUCGcUACUGc -5'
13937 5' -52.8 NC_003521.1 + 204324 0.69 0.973513
Target:  5'- uGUGGUGCGACu---GCGGCGAcUGGCa -3'
miRNA:   3'- -CACCAUGCUGcugcUGUCGCU-ACUGc -5'
13937 5' -52.8 NC_003521.1 + 58224 0.69 0.973513
Target:  5'- -aGG-ACGAUGAUGAUAGCGA-GAuCGa -3'
miRNA:   3'- caCCaUGCUGCUGCUGUCGCUaCU-GC- -5'
13937 5' -52.8 NC_003521.1 + 351 0.69 0.967885
Target:  5'- -aGGgcaaACGAUGugGGCGGCGugcUGugGa -3'
miRNA:   3'- caCCa---UGCUGCugCUGUCGCu--ACugC- -5'
13937 5' -52.8 NC_003521.1 + 142733 0.69 0.970796
Target:  5'- uGUGGUccuucgaguACGaagGCGACGACGG-GGUGACc -3'
miRNA:   3'- -CACCA---------UGC---UGCUGCUGUCgCUACUGc -5'
13937 5' -52.8 NC_003521.1 + 160448 0.69 0.970796
Target:  5'- -aGGcGCGACGgcACGGCAGagGAUGAUGu -3'
miRNA:   3'- caCCaUGCUGC--UGCUGUCg-CUACUGC- -5'
13937 5' -52.8 NC_003521.1 + 5753 0.69 0.970796
Target:  5'- aUGGUcAUGACGAgaaagaUGACGG-GAUGACGg -3'
miRNA:   3'- cACCA-UGCUGCU------GCUGUCgCUACUGC- -5'
13937 5' -52.8 NC_003521.1 + 206439 0.69 0.972985
Target:  5'- cGUGGUGuagcgauUGACGugGGCGGgggauugccccauCGGUGGCGu -3'
miRNA:   3'- -CACCAU-------GCUGCugCUGUC-------------GCUACUGC- -5'
13937 5' -52.8 NC_003521.1 + 72836 0.69 0.961458
Target:  5'- -cGGuUGCGAUGGCGACGcugagaggucGCGA-GACGa -3'
miRNA:   3'- caCC-AUGCUGCUGCUGU----------CGCUaCUGC- -5'
13937 5' -52.8 NC_003521.1 + 89056 0.69 0.973513
Target:  5'- aUGGUGCGggugaacggGCGACaauGACAGCGcgGAUu -3'
miRNA:   3'- cACCAUGC---------UGCUG---CUGUCGCuaCUGc -5'
13937 5' -52.8 NC_003521.1 + 87380 0.69 0.961457
Target:  5'- gGUGGaggACGA-GGCGGCGGaGGUGACGc -3'
miRNA:   3'- -CACCa--UGCUgCUGCUGUCgCUACUGC- -5'
13937 5' -52.8 NC_003521.1 + 91939 0.69 0.961457
Target:  5'- gGUGGacccgGCGGCGGaccccgUGGCGGCGAgGGCGg -3'
miRNA:   3'- -CACCa----UGCUGCU------GCUGUCGCUaCUGC- -5'
13937 5' -52.8 NC_003521.1 + 76089 0.69 0.964774
Target:  5'- -aGGUugGACuGGCGguACAGCGA-GAUGu -3'
miRNA:   3'- caCCAugCUG-CUGC--UGUCGCUaCUGC- -5'
13937 5' -52.8 NC_003521.1 + 200415 0.69 0.967885
Target:  5'- -aGGgcaaACGAUGugGGCGGCGugcUGugGa -3'
miRNA:   3'- caCCa---UGCUGCugCUGUCGCu--ACugC- -5'
13937 5' -52.8 NC_003521.1 + 123764 0.69 0.964774
Target:  5'- -cGGcagcgGCGACGACGACaccccgccGGCGAcgGACa -3'
miRNA:   3'- caCCa----UGCUGCUGCUG--------UCGCUa-CUGc -5'
13937 5' -52.8 NC_003521.1 + 93287 0.69 0.964774
Target:  5'- -gGGUGCGGCuACGGCGGCua-GACGc -3'
miRNA:   3'- caCCAUGCUGcUGCUGUCGcuaCUGC- -5'
13937 5' -52.8 NC_003521.1 + 53635 0.69 0.961458
Target:  5'- cUGGUGCGcCG-CGuCAGCGG-GACGg -3'
miRNA:   3'- cACCAUGCuGCuGCuGUCGCUaCUGC- -5'
13937 5' -52.8 NC_003521.1 + 76673 0.69 0.966665
Target:  5'- -cGGUAuguggcgaugaagcCGACGACGGguccgugUAGCGGUGGCa -3'
miRNA:   3'- caCCAU--------------GCUGCUGCU-------GUCGCUACUGc -5'
13937 5' -52.8 NC_003521.1 + 160545 0.7 0.957931
Target:  5'- -cGaGUACGACGACGACGGCuaccaccaGGCa -3'
miRNA:   3'- caC-CAUGCUGCUGCUGUCGcua-----CUGc -5'
13937 5' -52.8 NC_003521.1 + 124408 0.7 0.957931
Target:  5'- -cGGcaGCGGCGGCGgaggcaGCGGCGcgGGCGg -3'
miRNA:   3'- caCCa-UGCUGCUGC------UGUCGCuaCUGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.