Results 141 - 160 of 246 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13937 | 5' | -52.8 | NC_003521.1 | + | 127232 | 0.7 | 0.957931 |
Target: 5'- -cGGc-CGGCGACGACGGCGcgGGu- -3' miRNA: 3'- caCCauGCUGCUGCUGUCGCuaCUgc -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 160545 | 0.7 | 0.957931 |
Target: 5'- -cGaGUACGACGACGACGGCuaccaccaGGCa -3' miRNA: 3'- caC-CAUGCUGCUGCUGUCGcua-----CUGc -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 11482 | 0.7 | 0.957931 |
Target: 5'- gGUGGUAUGuACGugGAC-GUGAggcgcGACGg -3' miRNA: 3'- -CACCAUGC-UGCugCUGuCGCUa----CUGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 131217 | 0.7 | 0.956831 |
Target: 5'- -gGGgcCGGCGccagagacagcgucGCGACGGCGAUGcCGa -3' miRNA: 3'- caCCauGCUGC--------------UGCUGUCGCUACuGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 170340 | 0.7 | 0.957931 |
Target: 5'- uUGGaagACGugG-CGGCAGCGGUGGu- -3' miRNA: 3'- cACCa--UGCugCuGCUGUCGCUACUgc -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 204110 | 0.7 | 0.954189 |
Target: 5'- -gGGUGCucGGCGGCGACAuccGCGAcgagGGCGu -3' miRNA: 3'- caCCAUG--CUGCUGCUGU---CGCUa---CUGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 45669 | 0.7 | 0.954189 |
Target: 5'- -aGGUGgaggccacggcCGACGAagaGGCGGCcGAUGACGu -3' miRNA: 3'- caCCAU-----------GCUGCUg--CUGUCG-CUACUGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 233359 | 0.7 | 0.94164 |
Target: 5'- gGUGGggaggGCGGCG-CGAgCGGCGGaGGCGg -3' miRNA: 3'- -CACCa----UGCUGCuGCU-GUCGCUaCUGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 76867 | 0.7 | 0.94164 |
Target: 5'- gGUGGUaGCGGCGGCugGACGGUGGaGGCu -3' miRNA: 3'- -CACCA-UGCUGCUG--CUGUCGCUaCUGc -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 103547 | 0.7 | 0.94164 |
Target: 5'- gGUGGccUACGACGA-GACGGCGccGGCc -3' miRNA: 3'- -CACC--AUGCUGCUgCUGUCGCuaCUGc -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 167875 | 0.7 | 0.939814 |
Target: 5'- aUGGgACGACGACGACcaacgccaccacgAGCGGcaacagcagcggcgUGACGa -3' miRNA: 3'- cACCaUGCUGCUGCUG-------------UCGCU--------------ACUGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 151256 | 0.7 | 0.94164 |
Target: 5'- cUGGgACGGCGACGACgaggAGCGc-GACGa -3' miRNA: 3'- cACCaUGCUGCUGCUG----UCGCuaCUGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 44899 | 0.7 | 0.946047 |
Target: 5'- -cGGaucucagACGGCG-CGGCGGCGAgGACGa -3' miRNA: 3'- caCCa------UGCUGCuGCUGUCGCUaCUGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 123269 | 0.7 | 0.94941 |
Target: 5'- cUGGUACagcgugaGCGACGACAGCGucagguccgcgGGCGa -3' miRNA: 3'- cACCAUGc------UGCUGCUGUCGCua---------CUGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 28845 | 0.7 | 0.950229 |
Target: 5'- cUGG-ACGACGagcuGCGGCGGCGcgGcACGg -3' miRNA: 3'- cACCaUGCUGC----UGCUGUCGCuaC-UGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 163199 | 0.7 | 0.957931 |
Target: 5'- gGUGGU--GGCGGCGGCAGCGGcaguagcuccGGCGg -3' miRNA: 3'- -CACCAugCUGCUGCUGUCGCUa---------CUGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 116881 | 0.71 | 0.921733 |
Target: 5'- aGUGGcGCGGCuGCGGCGGCGcgccGGCGg -3' miRNA: 3'- -CACCaUGCUGcUGCUGUCGCua--CUGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 117446 | 0.71 | 0.937006 |
Target: 5'- ------gGGCGGCGGCAGCGAcGGCGg -3' miRNA: 3'- caccaugCUGCUGCUGUCGCUaCUGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 136932 | 0.71 | 0.937006 |
Target: 5'- -cGGUGCucuGCGGCGGCGGCGcgGGuCGc -3' miRNA: 3'- caCCAUGc--UGCUGCUGUCGCuaCU-GC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 117871 | 0.71 | 0.916183 |
Target: 5'- -gGGUAgGACGGgGGCGGCGGUagGugGu -3' miRNA: 3'- caCCAUgCUGCUgCUGUCGCUA--CugC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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