miRNA display CGI


Results 81 - 100 of 246 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13937 5' -52.8 NC_003521.1 + 233441 0.71 0.910405
Target:  5'- -cGGUAaCGGCGgccgccACGGCGGCGcgGACa -3'
miRNA:   3'- caCCAU-GCUGC------UGCUGUCGCuaCUGc -5'
13937 5' -52.8 NC_003521.1 + 142622 0.71 0.916183
Target:  5'- -aGGagGCGGCGGCGGCcgcGGCGGccgUGGCGg -3'
miRNA:   3'- caCCa-UGCUGCUGCUG---UCGCU---ACUGC- -5'
13937 5' -52.8 NC_003521.1 + 117871 0.71 0.916183
Target:  5'- -gGGUAgGACGGgGGCGGCGGUagGugGu -3'
miRNA:   3'- caCCAUgCUGCUgCUGUCGCUA--CugC- -5'
13937 5' -52.8 NC_003521.1 + 136932 0.71 0.937006
Target:  5'- -cGGUGCucuGCGGCGGCGGCGcgGGuCGc -3'
miRNA:   3'- caCCAUGc--UGCUGCUGUCGCuaCU-GC- -5'
13937 5' -52.8 NC_003521.1 + 163905 0.71 0.916183
Target:  5'- -cGGUGCGuuacucggguGCGGCGGCAGCGGcaACGa -3'
miRNA:   3'- caCCAUGC----------UGCUGCUGUCGCUacUGC- -5'
13937 5' -52.8 NC_003521.1 + 207425 0.71 0.93842
Target:  5'- aUGGUcgguagccagggagaGCGGCGGCuGGCGGCGugugugaGUGACGg -3'
miRNA:   3'- cACCA---------------UGCUGCUG-CUGUCGC-------UACUGC- -5'
13937 5' -52.8 NC_003521.1 + 168540 0.71 0.932144
Target:  5'- -cGGccaGCG-CGGCGGCGGCGcUGGCGg -3'
miRNA:   3'- caCCa--UGCuGCUGCUGUCGCuACUGC- -5'
13937 5' -52.8 NC_003521.1 + 39192 0.71 0.932144
Target:  5'- ----cGCGACGACGACGGuCGggGACc -3'
miRNA:   3'- caccaUGCUGCUGCUGUC-GCuaCUGc -5'
13937 5' -52.8 NC_003521.1 + 31071 0.71 0.929117
Target:  5'- aUGGUgagaaccggccaacaGCGACGACGGCGGCGGccgGuACa -3'
miRNA:   3'- cACCA---------------UGCUGCUGCUGUCGCUa--C-UGc -5'
13937 5' -52.8 NC_003521.1 + 234601 0.71 0.937006
Target:  5'- -aGGUcCGGCaGCGGaGGCGGUGACGg -3'
miRNA:   3'- caCCAuGCUGcUGCUgUCGCUACUGC- -5'
13937 5' -52.8 NC_003521.1 + 170340 0.7 0.957931
Target:  5'- uUGGaagACGugG-CGGCAGCGGUGGu- -3'
miRNA:   3'- cACCa--UGCugCuGCUGUCGCUACUgc -5'
13937 5' -52.8 NC_003521.1 + 167875 0.7 0.939814
Target:  5'- aUGGgACGACGACGACcaacgccaccacgAGCGGcaacagcagcggcgUGACGa -3'
miRNA:   3'- cACCaUGCUGCUGCUG-------------UCGCU--------------ACUGC- -5'
13937 5' -52.8 NC_003521.1 + 163199 0.7 0.957931
Target:  5'- gGUGGU--GGCGGCGGCAGCGGcaguagcuccGGCGg -3'
miRNA:   3'- -CACCAugCUGCUGCUGUCGCUa---------CUGC- -5'
13937 5' -52.8 NC_003521.1 + 76867 0.7 0.94164
Target:  5'- gGUGGUaGCGGCGGCugGACGGUGGaGGCu -3'
miRNA:   3'- -CACCA-UGCUGCUG--CUGUCGCUaCUGc -5'
13937 5' -52.8 NC_003521.1 + 103547 0.7 0.94164
Target:  5'- gGUGGccUACGACGA-GACGGCGccGGCc -3'
miRNA:   3'- -CACC--AUGCUGCUgCUGUCGCuaCUGc -5'
13937 5' -52.8 NC_003521.1 + 28845 0.7 0.950229
Target:  5'- cUGG-ACGACGagcuGCGGCGGCGcgGcACGg -3'
miRNA:   3'- cACCaUGCUGC----UGCUGUCGCuaC-UGC- -5'
13937 5' -52.8 NC_003521.1 + 123269 0.7 0.94941
Target:  5'- cUGGUACagcgugaGCGACGACAGCGucagguccgcgGGCGa -3'
miRNA:   3'- cACCAUGc------UGCUGCUGUCGCua---------CUGC- -5'
13937 5' -52.8 NC_003521.1 + 44899 0.7 0.946047
Target:  5'- -cGGaucucagACGGCG-CGGCGGCGAgGACGa -3'
miRNA:   3'- caCCa------UGCUGCuGCUGUCGCUaCUGC- -5'
13937 5' -52.8 NC_003521.1 + 151256 0.7 0.94164
Target:  5'- cUGGgACGGCGACGACgaggAGCGc-GACGa -3'
miRNA:   3'- cACCaUGCUGCUGCUG----UCGCuaCUGC- -5'
13937 5' -52.8 NC_003521.1 + 131217 0.7 0.956831
Target:  5'- -gGGgcCGGCGccagagacagcgucGCGACGGCGAUGcCGa -3'
miRNA:   3'- caCCauGCUGC--------------UGCUGUCGCUACuGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.