miRNA display CGI


Results 101 - 120 of 246 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13937 5' -52.8 NC_003521.1 + 151256 0.7 0.94164
Target:  5'- cUGGgACGGCGACGACgaggAGCGc-GACGa -3'
miRNA:   3'- cACCaUGCUGCUGCUG----UCGCuaCUGC- -5'
13937 5' -52.8 NC_003521.1 + 131217 0.7 0.956831
Target:  5'- -gGGgcCGGCGccagagacagcgucGCGACGGCGAUGcCGa -3'
miRNA:   3'- caCCauGCUGC--------------UGCUGUCGCUACuGC- -5'
13937 5' -52.8 NC_003521.1 + 163199 0.7 0.957931
Target:  5'- gGUGGU--GGCGGCGGCAGCGGcaguagcuccGGCGg -3'
miRNA:   3'- -CACCAugCUGCUGCUGUCGCUa---------CUGC- -5'
13937 5' -52.8 NC_003521.1 + 123269 0.7 0.94941
Target:  5'- cUGGUACagcgugaGCGACGACAGCGucagguccgcgGGCGa -3'
miRNA:   3'- cACCAUGc------UGCUGCUGUCGCua---------CUGC- -5'
13937 5' -52.8 NC_003521.1 + 170340 0.7 0.957931
Target:  5'- uUGGaagACGugG-CGGCAGCGGUGGu- -3'
miRNA:   3'- cACCa--UGCugCuGCUGUCGCUACUgc -5'
13937 5' -52.8 NC_003521.1 + 28845 0.7 0.950229
Target:  5'- cUGG-ACGACGagcuGCGGCGGCGcgGcACGg -3'
miRNA:   3'- cACCaUGCUGC----UGCUGUCGCuaC-UGC- -5'
13937 5' -52.8 NC_003521.1 + 76867 0.7 0.94164
Target:  5'- gGUGGUaGCGGCGGCugGACGGUGGaGGCu -3'
miRNA:   3'- -CACCA-UGCUGCUG--CUGUCGCUaCUGc -5'
13937 5' -52.8 NC_003521.1 + 44899 0.7 0.946047
Target:  5'- -cGGaucucagACGGCG-CGGCGGCGAgGACGa -3'
miRNA:   3'- caCCa------UGCUGCuGCUGUCGCUaCUGC- -5'
13937 5' -52.8 NC_003521.1 + 91939 0.69 0.961457
Target:  5'- gGUGGacccgGCGGCGGaccccgUGGCGGCGAgGGCGg -3'
miRNA:   3'- -CACCa----UGCUGCU------GCUGUCGCUaCUGC- -5'
13937 5' -52.8 NC_003521.1 + 351 0.69 0.967885
Target:  5'- -aGGgcaaACGAUGugGGCGGCGugcUGugGa -3'
miRNA:   3'- caCCa---UGCUGCugCUGUCGCu--ACugC- -5'
13937 5' -52.8 NC_003521.1 + 142733 0.69 0.970796
Target:  5'- uGUGGUccuucgaguACGaagGCGACGACGG-GGUGACc -3'
miRNA:   3'- -CACCA---------UGC---UGCUGCUGUCgCUACUGc -5'
13937 5' -52.8 NC_003521.1 + 160448 0.69 0.970796
Target:  5'- -aGGcGCGACGgcACGGCAGagGAUGAUGu -3'
miRNA:   3'- caCCaUGCUGC--UGCUGUCg-CUACUGC- -5'
13937 5' -52.8 NC_003521.1 + 5753 0.69 0.970796
Target:  5'- aUGGUcAUGACGAgaaagaUGACGG-GAUGACGg -3'
miRNA:   3'- cACCA-UGCUGCU------GCUGUCgCUACUGC- -5'
13937 5' -52.8 NC_003521.1 + 206439 0.69 0.972985
Target:  5'- cGUGGUGuagcgauUGACGugGGCGGgggauugccccauCGGUGGCGu -3'
miRNA:   3'- -CACCAU-------GCUGCugCUGUC-------------GCUACUGC- -5'
13937 5' -52.8 NC_003521.1 + 89056 0.69 0.973513
Target:  5'- aUGGUGCGggugaacggGCGACaauGACAGCGcgGAUu -3'
miRNA:   3'- cACCAUGC---------UGCUG---CUGUCGCuaCUGc -5'
13937 5' -52.8 NC_003521.1 + 76089 0.69 0.964774
Target:  5'- -aGGUugGACuGGCGguACAGCGA-GAUGu -3'
miRNA:   3'- caCCAugCUG-CUGC--UGUCGCUaCUGC- -5'
13937 5' -52.8 NC_003521.1 + 76673 0.69 0.966665
Target:  5'- -cGGUAuguggcgaugaagcCGACGACGGguccgugUAGCGGUGGCa -3'
miRNA:   3'- caCCAU--------------GCUGCUGCU-------GUCGCUACUGc -5'
13937 5' -52.8 NC_003521.1 + 72836 0.69 0.961458
Target:  5'- -cGGuUGCGAUGGCGACGcugagaggucGCGA-GACGa -3'
miRNA:   3'- caCC-AUGCUGCUGCUGU----------CGCUaCUGC- -5'
13937 5' -52.8 NC_003521.1 + 75963 0.69 0.961458
Target:  5'- uGUGGUGCgGACGGgGGCuggaccGCGGUGcCGg -3'
miRNA:   3'- -CACCAUG-CUGCUgCUGu-----CGCUACuGC- -5'
13937 5' -52.8 NC_003521.1 + 87380 0.69 0.961457
Target:  5'- gGUGGaggACGA-GGCGGCGGaGGUGACGc -3'
miRNA:   3'- -CACCa--UGCUgCUGCUGUCgCUACUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.