miRNA display CGI


Results 121 - 140 of 246 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13937 5' -52.8 NC_003521.1 + 93287 0.69 0.964774
Target:  5'- -gGGUGCGGCuACGGCGGCua-GACGc -3'
miRNA:   3'- caCCAUGCUGcUGCUGUCGcuaCUGC- -5'
13937 5' -52.8 NC_003521.1 + 91939 0.69 0.961457
Target:  5'- gGUGGacccgGCGGCGGaccccgUGGCGGCGAgGGCGg -3'
miRNA:   3'- -CACCa----UGCUGCU------GCUGUCGCUaCUGC- -5'
13937 5' -52.8 NC_003521.1 + 123764 0.69 0.964774
Target:  5'- -cGGcagcgGCGACGACGACaccccgccGGCGAcgGACa -3'
miRNA:   3'- caCCa----UGCUGCUGCUG--------UCGCUa-CUGc -5'
13937 5' -52.8 NC_003521.1 + 171960 0.69 0.964774
Target:  5'- uGUGG-AUGACGGugggUGGCAGCGG-GGCGg -3'
miRNA:   3'- -CACCaUGCUGCU----GCUGUCGCUaCUGC- -5'
13937 5' -52.8 NC_003521.1 + 53635 0.69 0.961458
Target:  5'- cUGGUGCGcCG-CGuCAGCGG-GACGg -3'
miRNA:   3'- cACCAUGCuGCuGCuGUCGCUaCUGC- -5'
13937 5' -52.8 NC_003521.1 + 3910 0.69 0.961458
Target:  5'- -aGGca-GACGGCGGCGGCcGUGGCa -3'
miRNA:   3'- caCCaugCUGCUGCUGUCGcUACUGc -5'
13937 5' -52.8 NC_003521.1 + 76089 0.69 0.964774
Target:  5'- -aGGUugGACuGGCGguACAGCGA-GAUGu -3'
miRNA:   3'- caCCAugCUG-CUGC--UGUCGCUaCUGC- -5'
13937 5' -52.8 NC_003521.1 + 87380 0.69 0.961457
Target:  5'- gGUGGaggACGA-GGCGGCGGaGGUGACGc -3'
miRNA:   3'- -CACCa--UGCUgCUGCUGUCgCUACUGC- -5'
13937 5' -52.8 NC_003521.1 + 54446 0.69 0.961458
Target:  5'- -nGGcaaguCGACGuCGcGCGGCGGUGGCGg -3'
miRNA:   3'- caCCau---GCUGCuGC-UGUCGCUACUGC- -5'
13937 5' -52.8 NC_003521.1 + 72836 0.69 0.961458
Target:  5'- -cGGuUGCGAUGGCGACGcugagaggucGCGA-GACGa -3'
miRNA:   3'- caCC-AUGCUGCUGCUGU----------CGCUaCUGC- -5'
13937 5' -52.8 NC_003521.1 + 75963 0.69 0.961458
Target:  5'- uGUGGUGCgGACGGgGGCuggaccGCGGUGcCGg -3'
miRNA:   3'- -CACCAUG-CUGCUgCUGu-----CGCUACuGC- -5'
13937 5' -52.8 NC_003521.1 + 200415 0.69 0.967885
Target:  5'- -aGGgcaaACGAUGugGGCGGCGugcUGugGa -3'
miRNA:   3'- caCCa---UGCUGCugCUGUCGCu--ACugC- -5'
13937 5' -52.8 NC_003521.1 + 76673 0.69 0.966665
Target:  5'- -cGGUAuguggcgaugaagcCGACGACGGguccgugUAGCGGUGGCa -3'
miRNA:   3'- caCCAU--------------GCUGCUGCU-------GUCGCUACUGc -5'
13937 5' -52.8 NC_003521.1 + 74572 0.68 0.980562
Target:  5'- -aGGgcgGCGACGgaGCGGCGGCGc-GGCGu -3'
miRNA:   3'- caCCa--UGCUGC--UGCUGUCGCuaCUGC- -5'
13937 5' -52.8 NC_003521.1 + 214012 0.68 0.978389
Target:  5'- -cGGUgacACGACGGCGcuCAG-GGUGGCGu -3'
miRNA:   3'- caCCA---UGCUGCUGCu-GUCgCUACUGC- -5'
13937 5' -52.8 NC_003521.1 + 52228 0.68 0.980562
Target:  5'- -cGGUAgGGCGGCGggcuacaguuggGCAGCGGcaGGCGg -3'
miRNA:   3'- caCCAUgCUGCUGC------------UGUCGCUa-CUGC- -5'
13937 5' -52.8 NC_003521.1 + 77710 0.68 0.980562
Target:  5'- cGUGGcgGCGuuguUGGCGACGGCGGccucggugGGCGg -3'
miRNA:   3'- -CACCa-UGCu---GCUGCUGUCGCUa-------CUGC- -5'
13937 5' -52.8 NC_003521.1 + 186807 0.68 0.982374
Target:  5'- -aGGcGCcACGGCGugGGCGAccagaucUGACGg -3'
miRNA:   3'- caCCaUGcUGCUGCugUCGCU-------ACUGC- -5'
13937 5' -52.8 NC_003521.1 + 118921 0.68 0.982567
Target:  5'- -cGGcGCcGCGGCGugGGCGgcGGCGu -3'
miRNA:   3'- caCCaUGcUGCUGCugUCGCuaCUGC- -5'
13937 5' -52.8 NC_003521.1 + 145587 0.68 0.980562
Target:  5'- -cGGcACGACG-CGGCGGCcGUGGCc -3'
miRNA:   3'- caCCaUGCUGCuGCUGUCGcUACUGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.