Results 141 - 160 of 246 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
13937 | 5' | -52.8 | NC_003521.1 | + | 6254 | 0.68 | 0.976042 |
Target: 5'- ----gACGACGGgGACGGCGAUaGCGu -3' miRNA: 3'- caccaUGCUGCUgCUGUCGCUAcUGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 32005 | 0.68 | 0.976042 |
Target: 5'- -cGGUcgaGGCGGCGGaGGCGGUGGCc -3' miRNA: 3'- caCCAug-CUGCUGCUgUCGCUACUGc -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 160605 | 0.68 | 0.976042 |
Target: 5'- -aGG-ACGACGACGAUAaCGAcGACa -3' miRNA: 3'- caCCaUGCUGCUGCUGUcGCUaCUGc -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 142791 | 0.68 | 0.982567 |
Target: 5'- -cGGUGCcACcaACGGCGGUGGUGGCa -3' miRNA: 3'- caCCAUGcUGc-UGCUGUCGCUACUGc -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 214440 | 0.68 | 0.984413 |
Target: 5'- -cGGUGCugcagaaguuGAUGACGGCGGCGcUGAa- -3' miRNA: 3'- caCCAUG----------CUGCUGCUGUCGCuACUgc -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 209558 | 0.68 | 0.984413 |
Target: 5'- -cGGggUGGCGGCGACGGUGgcGGgGg -3' miRNA: 3'- caCCauGCUGCUGCUGUCGCuaCUgC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 157498 | 0.68 | 0.980562 |
Target: 5'- uUGGUcgGACcucGCGGCGGCGuAUGACGg -3' miRNA: 3'- cACCAugCUGc--UGCUGUCGC-UACUGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 190197 | 0.68 | 0.982567 |
Target: 5'- -cGGcccgcACGAUGAUGAUAaaucGCGGUGGCGg -3' miRNA: 3'- caCCa----UGCUGCUGCUGU----CGCUACUGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 86979 | 0.68 | 0.978389 |
Target: 5'- -gGGUugucuACGAUGuaggaGGCGGCGGUGAUGa -3' miRNA: 3'- caCCA-----UGCUGCug---CUGUCGCUACUGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 214012 | 0.68 | 0.978389 |
Target: 5'- -cGGUgacACGACGGCGcuCAG-GGUGGCGu -3' miRNA: 3'- caCCA---UGCUGCUGCu-GUCgCUACUGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 57295 | 0.68 | 0.980352 |
Target: 5'- -cGGUGCG-CGGCGACugguggauaAGCGAgggcccgUGGCGc -3' miRNA: 3'- caCCAUGCuGCUGCUG---------UCGCU-------ACUGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 52228 | 0.68 | 0.980562 |
Target: 5'- -cGGUAgGGCGGCGggcuacaguuggGCAGCGGcaGGCGg -3' miRNA: 3'- caCCAUgCUGCUGC------------UGUCGCUa-CUGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 74572 | 0.68 | 0.980562 |
Target: 5'- -aGGgcgGCGACGgaGCGGCGGCGc-GGCGu -3' miRNA: 3'- caCCa--UGCUGC--UGCUGUCGCuaCUGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 77710 | 0.68 | 0.980562 |
Target: 5'- cGUGGcgGCGuuguUGGCGACGGCGGccucggugGGCGg -3' miRNA: 3'- -CACCa-UGCu---GCUGCUGUCGCUa-------CUGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 186807 | 0.68 | 0.982374 |
Target: 5'- -aGGcGCcACGGCGugGGCGAccagaucUGACGg -3' miRNA: 3'- caCCaUGcUGCUGCugUCGCU-------ACUGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 118921 | 0.68 | 0.982567 |
Target: 5'- -cGGcGCcGCGGCGugGGCGgcGGCGu -3' miRNA: 3'- caCCaUGcUGCUGCugUCGCuaCUGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 145587 | 0.68 | 0.980562 |
Target: 5'- -cGGcACGACG-CGGCGGCcGUGGCc -3' miRNA: 3'- caCCaUGCUGCuGCUGUCGcUACUGc -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 196118 | 0.68 | 0.984413 |
Target: 5'- ----aGCGA-GGCGACAGCGcUGACGc -3' miRNA: 3'- caccaUGCUgCUGCUGUCGCuACUGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 42698 | 0.68 | 0.984413 |
Target: 5'- uGUGGcggGCGGCGACucCGGCGuuugauuauaAUGACGc -3' miRNA: 3'- -CACCa--UGCUGCUGcuGUCGC----------UACUGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 139787 | 0.68 | 0.984413 |
Target: 5'- -gGGUuuGGCGuCGcccuCGGCGGUGGCGa -3' miRNA: 3'- caCCAugCUGCuGCu---GUCGCUACUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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