miRNA display CGI


Results 101 - 120 of 246 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13937 5' -52.8 NC_003521.1 + 45669 0.7 0.954189
Target:  5'- -aGGUGgaggccacggcCGACGAagaGGCGGCcGAUGACGu -3'
miRNA:   3'- caCCAU-----------GCUGCUg--CUGUCG-CUACUGC- -5'
13937 5' -52.8 NC_003521.1 + 131217 0.7 0.956831
Target:  5'- -gGGgcCGGCGccagagacagcgucGCGACGGCGAUGcCGa -3'
miRNA:   3'- caCCauGCUGC--------------UGCUGUCGCUACuGC- -5'
13937 5' -52.8 NC_003521.1 + 170340 0.7 0.957931
Target:  5'- uUGGaagACGugG-CGGCAGCGGUGGu- -3'
miRNA:   3'- cACCa--UGCugCuGCUGUCGCUACUgc -5'
13937 5' -52.8 NC_003521.1 + 124408 0.7 0.957931
Target:  5'- -cGGcaGCGGCGGCGgaggcaGCGGCGcgGGCGg -3'
miRNA:   3'- caCCa-UGCUGCUGC------UGUCGCuaCUGC- -5'
13937 5' -52.8 NC_003521.1 + 127232 0.7 0.957931
Target:  5'- -cGGc-CGGCGACGACGGCGcgGGu- -3'
miRNA:   3'- caCCauGCUGCUGCUGUCGCuaCUgc -5'
13937 5' -52.8 NC_003521.1 + 160545 0.7 0.957931
Target:  5'- -cGaGUACGACGACGACGGCuaccaccaGGCa -3'
miRNA:   3'- caC-CAUGCUGCUGCUGUCGcua-----CUGc -5'
13937 5' -52.8 NC_003521.1 + 163199 0.7 0.957931
Target:  5'- gGUGGU--GGCGGCGGCAGCGGcaguagcuccGGCGg -3'
miRNA:   3'- -CACCAugCUGCUGCUGUCGCUa---------CUGC- -5'
13937 5' -52.8 NC_003521.1 + 11482 0.7 0.957931
Target:  5'- gGUGGUAUGuACGugGAC-GUGAggcgcGACGg -3'
miRNA:   3'- -CACCAUGC-UGCugCUGuCGCUa----CUGC- -5'
13937 5' -52.8 NC_003521.1 + 87380 0.69 0.961457
Target:  5'- gGUGGaggACGA-GGCGGCGGaGGUGACGc -3'
miRNA:   3'- -CACCa--UGCUgCUGCUGUCgCUACUGC- -5'
13937 5' -52.8 NC_003521.1 + 91939 0.69 0.961457
Target:  5'- gGUGGacccgGCGGCGGaccccgUGGCGGCGAgGGCGg -3'
miRNA:   3'- -CACCa----UGCUGCU------GCUGUCGCUaCUGC- -5'
13937 5' -52.8 NC_003521.1 + 54446 0.69 0.961458
Target:  5'- -nGGcaaguCGACGuCGcGCGGCGGUGGCGg -3'
miRNA:   3'- caCCau---GCUGCuGC-UGUCGCUACUGC- -5'
13937 5' -52.8 NC_003521.1 + 53635 0.69 0.961458
Target:  5'- cUGGUGCGcCG-CGuCAGCGG-GACGg -3'
miRNA:   3'- cACCAUGCuGCuGCuGUCGCUaCUGC- -5'
13937 5' -52.8 NC_003521.1 + 3910 0.69 0.961458
Target:  5'- -aGGca-GACGGCGGCGGCcGUGGCa -3'
miRNA:   3'- caCCaugCUGCUGCUGUCGcUACUGc -5'
13937 5' -52.8 NC_003521.1 + 75963 0.69 0.961458
Target:  5'- uGUGGUGCgGACGGgGGCuggaccGCGGUGcCGg -3'
miRNA:   3'- -CACCAUG-CUGCUgCUGu-----CGCUACuGC- -5'
13937 5' -52.8 NC_003521.1 + 72836 0.69 0.961458
Target:  5'- -cGGuUGCGAUGGCGACGcugagaggucGCGA-GACGa -3'
miRNA:   3'- caCC-AUGCUGCUGCUGU----------CGCUaCUGC- -5'
13937 5' -52.8 NC_003521.1 + 76089 0.69 0.964774
Target:  5'- -aGGUugGACuGGCGguACAGCGA-GAUGu -3'
miRNA:   3'- caCCAugCUG-CUGC--UGUCGCUaCUGC- -5'
13937 5' -52.8 NC_003521.1 + 123764 0.69 0.964774
Target:  5'- -cGGcagcgGCGACGACGACaccccgccGGCGAcgGACa -3'
miRNA:   3'- caCCa----UGCUGCUGCUG--------UCGCUa-CUGc -5'
13937 5' -52.8 NC_003521.1 + 171960 0.69 0.964774
Target:  5'- uGUGG-AUGACGGugggUGGCAGCGG-GGCGg -3'
miRNA:   3'- -CACCaUGCUGCU----GCUGUCGCUaCUGC- -5'
13937 5' -52.8 NC_003521.1 + 93287 0.69 0.964774
Target:  5'- -gGGUGCGGCuACGGCGGCua-GACGc -3'
miRNA:   3'- caCCAUGCUGcUGCUGUCGcuaCUGC- -5'
13937 5' -52.8 NC_003521.1 + 76673 0.69 0.966665
Target:  5'- -cGGUAuguggcgaugaagcCGACGACGGguccgugUAGCGGUGGCa -3'
miRNA:   3'- caCCAU--------------GCUGCUGCU-------GUCGCUACUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.