miRNA display CGI


Results 121 - 140 of 246 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13937 5' -52.8 NC_003521.1 + 41709 0.69 0.967885
Target:  5'- cGUGGUguagACGGCGGCGGgGGuCGAgaaGAUGa -3'
miRNA:   3'- -CACCA----UGCUGCUGCUgUC-GCUa--CUGC- -5'
13937 5' -52.8 NC_003521.1 + 351 0.69 0.967885
Target:  5'- -aGGgcaaACGAUGugGGCGGCGugcUGugGa -3'
miRNA:   3'- caCCa---UGCUGCugCUGUCGCu--ACugC- -5'
13937 5' -52.8 NC_003521.1 + 200415 0.69 0.967885
Target:  5'- -aGGgcaaACGAUGugGGCGGCGugcUGugGa -3'
miRNA:   3'- caCCa---UGCUGCugCUGUCGCu--ACugC- -5'
13937 5' -52.8 NC_003521.1 + 5753 0.69 0.970796
Target:  5'- aUGGUcAUGACGAgaaagaUGACGG-GAUGACGg -3'
miRNA:   3'- cACCA-UGCUGCU------GCUGUCgCUACUGC- -5'
13937 5' -52.8 NC_003521.1 + 220928 0.69 0.970796
Target:  5'- --cGUGcCGA-GACGACGGCGAcGACGg -3'
miRNA:   3'- cacCAU-GCUgCUGCUGUCGCUaCUGC- -5'
13937 5' -52.8 NC_003521.1 + 142733 0.69 0.970796
Target:  5'- uGUGGUccuucgaguACGaagGCGACGACGG-GGUGACc -3'
miRNA:   3'- -CACCA---------UGC---UGCUGCUGUCgCUACUGc -5'
13937 5' -52.8 NC_003521.1 + 131682 0.69 0.970796
Target:  5'- uUGGUGuugaaGGCGuuGACGGCGAUG-CGg -3'
miRNA:   3'- cACCAUg----CUGCugCUGUCGCUACuGC- -5'
13937 5' -52.8 NC_003521.1 + 160448 0.69 0.970796
Target:  5'- -aGGcGCGACGgcACGGCAGagGAUGAUGu -3'
miRNA:   3'- caCCaUGCUGC--UGCUGUCg-CUACUGC- -5'
13937 5' -52.8 NC_003521.1 + 206439 0.69 0.972985
Target:  5'- cGUGGUGuagcgauUGACGugGGCGGgggauugccccauCGGUGGCGu -3'
miRNA:   3'- -CACCAU-------GCUGCugCUGUC-------------GCUACUGC- -5'
13937 5' -52.8 NC_003521.1 + 89056 0.69 0.973513
Target:  5'- aUGGUGCGggugaacggGCGACaauGACAGCGcgGAUu -3'
miRNA:   3'- cACCAUGC---------UGCUG---CUGUCGCuaCUGc -5'
13937 5' -52.8 NC_003521.1 + 204324 0.69 0.973513
Target:  5'- uGUGGUGCGACu---GCGGCGAcUGGCa -3'
miRNA:   3'- -CACCAUGCUGcugcUGUCGCU-ACUGc -5'
13937 5' -52.8 NC_003521.1 + 33153 0.69 0.973513
Target:  5'- -gGGcACGGCGGCagcaccGGCGGCGcgGGCGc -3'
miRNA:   3'- caCCaUGCUGCUG------CUGUCGCuaCUGC- -5'
13937 5' -52.8 NC_003521.1 + 58224 0.69 0.973513
Target:  5'- -aGG-ACGAUGAUGAUAGCGA-GAuCGa -3'
miRNA:   3'- caCCaUGCUGCUGCUGUCGCUaCU-GC- -5'
13937 5' -52.8 NC_003521.1 + 29400 0.68 0.976042
Target:  5'- -aGGacgACGACGAgGACAGUccgggccccGGUGACa -3'
miRNA:   3'- caCCa--UGCUGCUgCUGUCG---------CUACUGc -5'
13937 5' -52.8 NC_003521.1 + 54158 0.68 0.976042
Target:  5'- -cGGUgGCGGgGGCGGCGGCGA--ACGc -3'
miRNA:   3'- caCCA-UGCUgCUGCUGUCGCUacUGC- -5'
13937 5' -52.8 NC_003521.1 + 6254 0.68 0.976042
Target:  5'- ----gACGACGGgGACGGCGAUaGCGu -3'
miRNA:   3'- caccaUGCUGCUgCUGUCGCUAcUGC- -5'
13937 5' -52.8 NC_003521.1 + 32005 0.68 0.976042
Target:  5'- -cGGUcgaGGCGGCGGaGGCGGUGGCc -3'
miRNA:   3'- caCCAug-CUGCUGCUgUCGCUACUGc -5'
13937 5' -52.8 NC_003521.1 + 160605 0.68 0.976042
Target:  5'- -aGG-ACGACGACGAUAaCGAcGACa -3'
miRNA:   3'- caCCaUGCUGCUGCUGUcGCUaCUGc -5'
13937 5' -52.8 NC_003521.1 + 43827 0.68 0.978162
Target:  5'- -cGGUgcuugacGCGGCGcCGGCGGCGggGAgCGg -3'
miRNA:   3'- caCCA-------UGCUGCuGCUGUCGCuaCU-GC- -5'
13937 5' -52.8 NC_003521.1 + 214012 0.68 0.978389
Target:  5'- -cGGUgacACGACGGCGcuCAG-GGUGGCGu -3'
miRNA:   3'- caCCA---UGCUGCUGCu-GUCgCUACUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.