Results 101 - 120 of 246 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13937 | 5' | -52.8 | NC_003521.1 | + | 77710 | 0.68 | 0.980562 |
Target: 5'- cGUGGcgGCGuuguUGGCGACGGCGGccucggugGGCGg -3' miRNA: 3'- -CACCa-UGCu---GCUGCUGUCGCUa-------CUGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 57295 | 0.68 | 0.980352 |
Target: 5'- -cGGUGCG-CGGCGACugguggauaAGCGAgggcccgUGGCGc -3' miRNA: 3'- caCCAUGCuGCUGCUG---------UCGCU-------ACUGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 227407 | 0.68 | 0.978389 |
Target: 5'- -aGGgugGCGGCGACGACuuGCGAguGCu -3' miRNA: 3'- caCCa--UGCUGCUGCUGu-CGCUacUGc -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 133056 | 0.68 | 0.978389 |
Target: 5'- -cGGcgucaGGCGGCGGCGG-GAUGACGc -3' miRNA: 3'- caCCaug--CUGCUGCUGUCgCUACUGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 145870 | 0.68 | 0.978389 |
Target: 5'- -gGGUGCGACuGCaGCAGCGA-GGCc -3' miRNA: 3'- caCCAUGCUGcUGcUGUCGCUaCUGc -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 86979 | 0.68 | 0.978389 |
Target: 5'- -gGGUugucuACGAUGuaggaGGCGGCGGUGAUGa -3' miRNA: 3'- caCCA-----UGCUGCug---CUGUCGCUACUGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 214012 | 0.68 | 0.978389 |
Target: 5'- -cGGUgacACGACGGCGcuCAG-GGUGGCGu -3' miRNA: 3'- caCCA---UGCUGCUGCu-GUCgCUACUGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 43827 | 0.68 | 0.978162 |
Target: 5'- -cGGUgcuugacGCGGCGcCGGCGGCGggGAgCGg -3' miRNA: 3'- caCCA-------UGCUGCuGCUGUCGCuaCU-GC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 29400 | 0.68 | 0.976042 |
Target: 5'- -aGGacgACGACGAgGACAGUccgggccccGGUGACa -3' miRNA: 3'- caCCa--UGCUGCUgCUGUCG---------CUACUGc -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 54158 | 0.68 | 0.976042 |
Target: 5'- -cGGUgGCGGgGGCGGCGGCGA--ACGc -3' miRNA: 3'- caCCA-UGCUgCUGCUGUCGCUacUGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 32005 | 0.68 | 0.976042 |
Target: 5'- -cGGUcgaGGCGGCGGaGGCGGUGGCc -3' miRNA: 3'- caCCAug-CUGCUGCUgUCGCUACUGc -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 160605 | 0.68 | 0.976042 |
Target: 5'- -aGG-ACGACGACGAUAaCGAcGACa -3' miRNA: 3'- caCCaUGCUGCUGCUGUcGCUaCUGc -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 6254 | 0.68 | 0.976042 |
Target: 5'- ----gACGACGGgGACGGCGAUaGCGu -3' miRNA: 3'- caccaUGCUGCUgCUGUCGCUAcUGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 204324 | 0.69 | 0.973513 |
Target: 5'- uGUGGUGCGACu---GCGGCGAcUGGCa -3' miRNA: 3'- -CACCAUGCUGcugcUGUCGCU-ACUGc -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 58224 | 0.69 | 0.973513 |
Target: 5'- -aGG-ACGAUGAUGAUAGCGA-GAuCGa -3' miRNA: 3'- caCCaUGCUGCUGCUGUCGCUaCU-GC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 33153 | 0.69 | 0.973513 |
Target: 5'- -gGGcACGGCGGCagcaccGGCGGCGcgGGCGc -3' miRNA: 3'- caCCaUGCUGCUG------CUGUCGCuaCUGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 89056 | 0.69 | 0.973513 |
Target: 5'- aUGGUGCGggugaacggGCGACaauGACAGCGcgGAUu -3' miRNA: 3'- cACCAUGC---------UGCUG---CUGUCGCuaCUGc -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 206439 | 0.69 | 0.972985 |
Target: 5'- cGUGGUGuagcgauUGACGugGGCGGgggauugccccauCGGUGGCGu -3' miRNA: 3'- -CACCAU-------GCUGCugCUGUC-------------GCUACUGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 5753 | 0.69 | 0.970796 |
Target: 5'- aUGGUcAUGACGAgaaagaUGACGG-GAUGACGg -3' miRNA: 3'- cACCA-UGCUGCU------GCUGUCgCUACUGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 220928 | 0.69 | 0.970796 |
Target: 5'- --cGUGcCGA-GACGACGGCGAcGACGg -3' miRNA: 3'- cacCAU-GCUgCUGCUGUCGCUaCUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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