miRNA display CGI


Results 121 - 140 of 246 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13937 5' -52.8 NC_003521.1 + 160448 0.69 0.970796
Target:  5'- -aGGcGCGACGgcACGGCAGagGAUGAUGu -3'
miRNA:   3'- caCCaUGCUGC--UGCUGUCg-CUACUGC- -5'
13937 5' -52.8 NC_003521.1 + 5753 0.69 0.970796
Target:  5'- aUGGUcAUGACGAgaaagaUGACGG-GAUGACGg -3'
miRNA:   3'- cACCA-UGCUGCU------GCUGUCgCUACUGC- -5'
13937 5' -52.8 NC_003521.1 + 131682 0.69 0.970796
Target:  5'- uUGGUGuugaaGGCGuuGACGGCGAUG-CGg -3'
miRNA:   3'- cACCAUg----CUGCugCUGUCGCUACuGC- -5'
13937 5' -52.8 NC_003521.1 + 41709 0.69 0.967885
Target:  5'- cGUGGUguagACGGCGGCGGgGGuCGAgaaGAUGa -3'
miRNA:   3'- -CACCA----UGCUGCUGCUgUC-GCUa--CUGC- -5'
13937 5' -52.8 NC_003521.1 + 200415 0.69 0.967885
Target:  5'- -aGGgcaaACGAUGugGGCGGCGugcUGugGa -3'
miRNA:   3'- caCCa---UGCUGCugCUGUCGCu--ACugC- -5'
13937 5' -52.8 NC_003521.1 + 351 0.69 0.967885
Target:  5'- -aGGgcaaACGAUGugGGCGGCGugcUGugGa -3'
miRNA:   3'- caCCa---UGCUGCugCUGUCGCu--ACugC- -5'
13937 5' -52.8 NC_003521.1 + 76673 0.69 0.966665
Target:  5'- -cGGUAuguggcgaugaagcCGACGACGGguccgugUAGCGGUGGCa -3'
miRNA:   3'- caCCAU--------------GCUGCUGCU-------GUCGCUACUGc -5'
13937 5' -52.8 NC_003521.1 + 123764 0.69 0.964774
Target:  5'- -cGGcagcgGCGACGACGACaccccgccGGCGAcgGACa -3'
miRNA:   3'- caCCa----UGCUGCUGCUG--------UCGCUa-CUGc -5'
13937 5' -52.8 NC_003521.1 + 93287 0.69 0.964774
Target:  5'- -gGGUGCGGCuACGGCGGCua-GACGc -3'
miRNA:   3'- caCCAUGCUGcUGCUGUCGcuaCUGC- -5'
13937 5' -52.8 NC_003521.1 + 171960 0.69 0.964774
Target:  5'- uGUGG-AUGACGGugggUGGCAGCGG-GGCGg -3'
miRNA:   3'- -CACCaUGCUGCU----GCUGUCGCUaCUGC- -5'
13937 5' -52.8 NC_003521.1 + 76089 0.69 0.964774
Target:  5'- -aGGUugGACuGGCGguACAGCGA-GAUGu -3'
miRNA:   3'- caCCAugCUG-CUGC--UGUCGCUaCUGC- -5'
13937 5' -52.8 NC_003521.1 + 75963 0.69 0.961458
Target:  5'- uGUGGUGCgGACGGgGGCuggaccGCGGUGcCGg -3'
miRNA:   3'- -CACCAUG-CUGCUgCUGu-----CGCUACuGC- -5'
13937 5' -52.8 NC_003521.1 + 53635 0.69 0.961458
Target:  5'- cUGGUGCGcCG-CGuCAGCGG-GACGg -3'
miRNA:   3'- cACCAUGCuGCuGCuGUCGCUaCUGC- -5'
13937 5' -52.8 NC_003521.1 + 72836 0.69 0.961458
Target:  5'- -cGGuUGCGAUGGCGACGcugagaggucGCGA-GACGa -3'
miRNA:   3'- caCC-AUGCUGCUGCUGU----------CGCUaCUGC- -5'
13937 5' -52.8 NC_003521.1 + 54446 0.69 0.961458
Target:  5'- -nGGcaaguCGACGuCGcGCGGCGGUGGCGg -3'
miRNA:   3'- caCCau---GCUGCuGC-UGUCGCUACUGC- -5'
13937 5' -52.8 NC_003521.1 + 3910 0.69 0.961458
Target:  5'- -aGGca-GACGGCGGCGGCcGUGGCa -3'
miRNA:   3'- caCCaugCUGCUGCUGUCGcUACUGc -5'
13937 5' -52.8 NC_003521.1 + 87380 0.69 0.961457
Target:  5'- gGUGGaggACGA-GGCGGCGGaGGUGACGc -3'
miRNA:   3'- -CACCa--UGCUgCUGCUGUCgCUACUGC- -5'
13937 5' -52.8 NC_003521.1 + 91939 0.69 0.961457
Target:  5'- gGUGGacccgGCGGCGGaccccgUGGCGGCGAgGGCGg -3'
miRNA:   3'- -CACCa----UGCUGCU------GCUGUCGCUaCUGC- -5'
13937 5' -52.8 NC_003521.1 + 160545 0.7 0.957931
Target:  5'- -cGaGUACGACGACGACGGCuaccaccaGGCa -3'
miRNA:   3'- caC-CAUGCUGCUGCUGUCGcua-----CUGc -5'
13937 5' -52.8 NC_003521.1 + 11482 0.7 0.957931
Target:  5'- gGUGGUAUGuACGugGAC-GUGAggcgcGACGg -3'
miRNA:   3'- -CACCAUGC-UGCugCUGuCGCUa----CUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.