Results 101 - 120 of 246 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13937 | 5' | -52.8 | NC_003521.1 | + | 115369 | 0.76 | 0.704879 |
Target: 5'- -cGGUcACGACGGgGGCGGCGAcGGCGc -3' miRNA: 3'- caCCA-UGCUGCUgCUGUCGCUaCUGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 116406 | 0.78 | 0.62516 |
Target: 5'- uUGGUugGGuaGCGGCGGCGAUGGCa -3' miRNA: 3'- cACCAugCUgcUGCUGUCGCUACUGc -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 116469 | 0.72 | 0.891718 |
Target: 5'- cGUGGUgggacacgugGCGGCGAUGAagAGCGuccGUGACGg -3' miRNA: 3'- -CACCA----------UGCUGCUGCUg-UCGC---UACUGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 116481 | 0.75 | 0.7898 |
Target: 5'- -aGG-ACGACGaaGCGGCGGCGAcGGCGa -3' miRNA: 3'- caCCaUGCUGC--UGCUGUCGCUaCUGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 116881 | 0.71 | 0.921733 |
Target: 5'- aGUGGcGCGGCuGCGGCGGCGcgccGGCGg -3' miRNA: 3'- -CACCaUGCUGcUGCUGUCGCua--CUGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 117388 | 0.67 | 0.989067 |
Target: 5'- gGUGGaagaggagGCGGCGGCugaGCGGCGGaGGCGg -3' miRNA: 3'- -CACCa-------UGCUGCUGc--UGUCGCUaCUGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 117446 | 0.71 | 0.937006 |
Target: 5'- ------gGGCGGCGGCAGCGAcGGCGg -3' miRNA: 3'- caccaugCUGCUGCUGUCGCUaCUGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 117536 | 0.8 | 0.488265 |
Target: 5'- -cGGcaccACGGcCGACGACGGCGGUGGCGg -3' miRNA: 3'- caCCa---UGCU-GCUGCUGUCGCUACUGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 117668 | 0.66 | 0.996362 |
Target: 5'- -gGGcACGGCacCGACGGCGGgauagGACGg -3' miRNA: 3'- caCCaUGCUGcuGCUGUCGCUa----CUGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 117871 | 0.71 | 0.916183 |
Target: 5'- -gGGUAgGACGGgGGCGGCGGUagGugGu -3' miRNA: 3'- caCCAUgCUGCUgCUGUCGCUA--CugC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 117930 | 0.76 | 0.724386 |
Target: 5'- gGUGGUGCugcugcugagguGGCGGCGGCGGCGGggGACc -3' miRNA: 3'- -CACCAUG------------CUGCUGCUGUCGCUa-CUGc -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 118101 | 0.67 | 0.992559 |
Target: 5'- -cGG-ACGAgGACGACuGCGA-GGCc -3' miRNA: 3'- caCCaUGCUgCUGCUGuCGCUaCUGc -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 118360 | 0.76 | 0.695034 |
Target: 5'- cGUGGU-CGugGGCGACGGCgccgccGAUGGCu -3' miRNA: 3'- -CACCAuGCugCUGCUGUCG------CUACUGc -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 118475 | 0.66 | 0.994346 |
Target: 5'- -cGGcgACGGCGGCGGCcGCGcgcucGGCGg -3' miRNA: 3'- caCCa-UGCUGCUGCUGuCGCua---CUGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 118921 | 0.68 | 0.982567 |
Target: 5'- -cGGcGCcGCGGCGugGGCGgcGGCGu -3' miRNA: 3'- caCCaUGcUGCUGCugUCGCuaCUGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 123096 | 0.74 | 0.807391 |
Target: 5'- -cGGUcaggACGACGACGGUAGCGgcGGCGu -3' miRNA: 3'- caCCA----UGCUGCUGCUGUCGCuaCUGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 123269 | 0.7 | 0.94941 |
Target: 5'- cUGGUACagcgugaGCGACGACAGCGucagguccgcgGGCGa -3' miRNA: 3'- cACCAUGc------UGCUGCUGUCGCua---------CUGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 123764 | 0.69 | 0.964774 |
Target: 5'- -cGGcagcgGCGACGACGACaccccgccGGCGAcgGACa -3' miRNA: 3'- caCCa----UGCUGCUGCUG--------UCGCUa-CUGc -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 124089 | 0.66 | 0.993851 |
Target: 5'- -cGGgccCGACGGCGugGGCGGgaagcagcgcgucgcUGugGu -3' miRNA: 3'- caCCau-GCUGCUGCugUCGCU---------------ACugC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 124408 | 0.7 | 0.957931 |
Target: 5'- -cGGcaGCGGCGGCGgaggcaGCGGCGcgGGCGg -3' miRNA: 3'- caCCa-UGCUGCUGC------UGUCGCuaCUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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