Results 121 - 140 of 246 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13937 | 5' | -52.8 | NC_003521.1 | + | 124447 | 0.66 | 0.996362 |
Target: 5'- cGUGGUugGGCcGCGGCGGCac--GCGu -3' miRNA: 3'- -CACCAugCUGcUGCUGUCGcuacUGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 125519 | 0.66 | 0.994019 |
Target: 5'- cGUGGUGCuGAgGAuCGGCAGCGcuuccugcgucaGACGg -3' miRNA: 3'- -CACCAUG-CUgCU-GCUGUCGCua----------CUGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 127232 | 0.7 | 0.957931 |
Target: 5'- -cGGc-CGGCGACGACGGCGcgGGu- -3' miRNA: 3'- caCCauGCUGCUGCUGUCGCuaCUgc -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 127318 | 0.73 | 0.84068 |
Target: 5'- -aGGcGCGuCGACGACGGCGAcGGCc -3' miRNA: 3'- caCCaUGCuGCUGCUGUCGCUaCUGc -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 127368 | 0.67 | 0.990349 |
Target: 5'- cGUGGUGCG-CGGCaGguGCG-UGAUGa -3' miRNA: 3'- -CACCAUGCuGCUGcUguCGCuACUGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 128259 | 0.67 | 0.992559 |
Target: 5'- -aGGUAggcCGugGugGGCAGCGcguugcgGAUGg -3' miRNA: 3'- caCCAU---GCugCugCUGUCGCua-----CUGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 129208 | 0.66 | 0.994346 |
Target: 5'- gGUGGUcuggcGCGugGugGGCAGUcc-GGCGc -3' miRNA: 3'- -CACCA-----UGCugCugCUGUCGcuaCUGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 129580 | 0.67 | 0.992559 |
Target: 5'- -cGGgcUGGCGGCGGCGGCGc--ACGc -3' miRNA: 3'- caCCauGCUGCUGCUGUCGCuacUGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 130016 | 0.74 | 0.815961 |
Target: 5'- -cGGUagaggGCGGCGAaGACGGCGcgGACGc -3' miRNA: 3'- caCCA-----UGCUGCUgCUGUCGCuaCUGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 130401 | 0.67 | 0.989067 |
Target: 5'- -cGGUgGCGGCaGCGGCGGCGccgccGACGa -3' miRNA: 3'- caCCA-UGCUGcUGCUGUCGCua---CUGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 131045 | 0.76 | 0.724385 |
Target: 5'- cUGG-GCGGCGGCGGCGggccucuggacGCGGUGGCGg -3' miRNA: 3'- cACCaUGCUGCUGCUGU-----------CGCUACUGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 131217 | 0.7 | 0.956831 |
Target: 5'- -gGGgcCGGCGccagagacagcgucGCGACGGCGAUGcCGa -3' miRNA: 3'- caCCauGCUGC--------------UGCUGUCGCUACuGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 131682 | 0.69 | 0.970796 |
Target: 5'- uUGGUGuugaaGGCGuuGACGGCGAUG-CGg -3' miRNA: 3'- cACCAUg----CUGCugCUGUCGCUACuGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 132425 | 0.66 | 0.996362 |
Target: 5'- --uGUGCGGCGACGccgcugguaGCGGUGGUGGg- -3' miRNA: 3'- cacCAUGCUGCUGC---------UGUCGCUACUgc -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 132827 | 0.71 | 0.930641 |
Target: 5'- cUGGUgucgaccggagaagACGGCGGCaccgagGGCGGUGGUGGCGg -3' miRNA: 3'- cACCA--------------UGCUGCUG------CUGUCGCUACUGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 133056 | 0.68 | 0.978389 |
Target: 5'- -cGGcgucaGGCGGCGGCGG-GAUGACGc -3' miRNA: 3'- caCCaug--CUGCUGCUGUCgCUACUGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 133225 | 0.67 | 0.991511 |
Target: 5'- -gGGUucaGgGGCGAUGGCGGuCGAgGACGa -3' miRNA: 3'- caCCA---UgCUGCUGCUGUC-GCUaCUGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 134174 | 0.75 | 0.771664 |
Target: 5'- -aGGUgGCcAUGAUGACGGCGAUGAUGa -3' miRNA: 3'- caCCA-UGcUGCUGCUGUCGCUACUGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 136932 | 0.71 | 0.937006 |
Target: 5'- -cGGUGCucuGCGGCGGCGGCGcgGGuCGc -3' miRNA: 3'- caCCAUGc--UGCUGCUGUCGCuaCU-GC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 137252 | 0.75 | 0.780796 |
Target: 5'- -gGGgcCGACGGCGGCAGCGGgcagaGCGg -3' miRNA: 3'- caCCauGCUGCUGCUGUCGCUac---UGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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