miRNA display CGI


Results 141 - 160 of 246 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13937 5' -52.8 NC_003521.1 + 139787 0.68 0.984413
Target:  5'- -gGGUuuGGCGuCGcccuCGGCGGUGGCGa -3'
miRNA:   3'- caCCAugCUGCuGCu---GUCGCUACUGC- -5'
13937 5' -52.8 NC_003521.1 + 141361 0.77 0.655229
Target:  5'- -gGGUGCGGCGGCGGuCGGUGAcgcggugcccgaUGACGa -3'
miRNA:   3'- caCCAUGCUGCUGCU-GUCGCU------------ACUGC- -5'
13937 5' -52.8 NC_003521.1 + 142442 0.71 0.932145
Target:  5'- -cGGUagcgGCGuCGACGACGGCGAgcuUGcGCGg -3'
miRNA:   3'- caCCA----UGCuGCUGCUGUCGCU---AC-UGC- -5'
13937 5' -52.8 NC_003521.1 + 142622 0.71 0.916183
Target:  5'- -aGGagGCGGCGGCGGCcgcGGCGGccgUGGCGg -3'
miRNA:   3'- caCCa-UGCUGCUGCUG---UCGCU---ACUGC- -5'
13937 5' -52.8 NC_003521.1 + 142689 0.67 0.991511
Target:  5'- cUGGUGC--CGACGcUGGUGGUGACGu -3'
miRNA:   3'- cACCAUGcuGCUGCuGUCGCUACUGC- -5'
13937 5' -52.8 NC_003521.1 + 142733 0.69 0.970796
Target:  5'- uGUGGUccuucgaguACGaagGCGACGACGG-GGUGACc -3'
miRNA:   3'- -CACCA---------UGC---UGCUGCUGUCgCUACUGc -5'
13937 5' -52.8 NC_003521.1 + 142771 0.72 0.885047
Target:  5'- aGUGGUgGCGGCGgccACGACGGUGGUuGCGc -3'
miRNA:   3'- -CACCA-UGCUGC---UGCUGUCGCUAcUGC- -5'
13937 5' -52.8 NC_003521.1 + 142791 0.68 0.982567
Target:  5'- -cGGUGCcACcaACGGCGGUGGUGGCa -3'
miRNA:   3'- caCCAUGcUGc-UGCUGUCGCUACUGc -5'
13937 5' -52.8 NC_003521.1 + 143117 0.67 0.987655
Target:  5'- -aGG-ACGACGAgucggccaccacCGACGGCGAgggagugGGCGu -3'
miRNA:   3'- caCCaUGCUGCU------------GCUGUCGCUa------CUGC- -5'
13937 5' -52.8 NC_003521.1 + 143837 0.66 0.993502
Target:  5'- -cGGUA-GACGcccgugccCGcCAGCGAUGGCGg -3'
miRNA:   3'- caCCAUgCUGCu-------GCuGUCGCUACUGC- -5'
13937 5' -52.8 NC_003521.1 + 145587 0.68 0.980562
Target:  5'- -cGGcACGACG-CGGCGGCcGUGGCc -3'
miRNA:   3'- caCCaUGCUGCuGCUGUCGcUACUGc -5'
13937 5' -52.8 NC_003521.1 + 145862 0.71 0.921733
Target:  5'- cUGGgccCGGCGGCgGGCGGCGccGACGa -3'
miRNA:   3'- cACCau-GCUGCUG-CUGUCGCuaCUGC- -5'
13937 5' -52.8 NC_003521.1 + 145870 0.68 0.978389
Target:  5'- -gGGUGCGACuGCaGCAGCGA-GGCc -3'
miRNA:   3'- caCCAUGCUGcUGcUGUCGCUaCUGc -5'
13937 5' -52.8 NC_003521.1 + 146642 0.74 0.80739
Target:  5'- -aGGgccccgGCcACGACGACGGCGAggagGACGg -3'
miRNA:   3'- caCCa-----UGcUGCUGCUGUCGCUa---CUGC- -5'
13937 5' -52.8 NC_003521.1 + 148422 0.66 0.996362
Target:  5'- aUGGUGCG--GGCGGCcGCGccGGCGg -3'
miRNA:   3'- cACCAUGCugCUGCUGuCGCuaCUGC- -5'
13937 5' -52.8 NC_003521.1 + 150317 0.67 0.989067
Target:  5'- -aGGU-CGACGAUGaccacccgguGCAGCG-UGGCGu -3'
miRNA:   3'- caCCAuGCUGCUGC----------UGUCGCuACUGC- -5'
13937 5' -52.8 NC_003521.1 + 150556 0.8 0.526276
Target:  5'- gGUGGUGCGGguggUGGCGGCGGCGgcGGCGc -3'
miRNA:   3'- -CACCAUGCU----GCUGCUGUCGCuaCUGC- -5'
13937 5' -52.8 NC_003521.1 + 150696 0.66 0.994346
Target:  5'- -gGGUGCugcuGCGcCGGCGGCGAcUGGCu -3'
miRNA:   3'- caCCAUGc---UGCuGCUGUCGCU-ACUGc -5'
13937 5' -52.8 NC_003521.1 + 151171 0.66 0.995769
Target:  5'- cGUGGaAgGGCG-CG-CAGuCGAUGACGc -3'
miRNA:   3'- -CACCaUgCUGCuGCuGUC-GCUACUGC- -5'
13937 5' -52.8 NC_003521.1 + 151256 0.7 0.94164
Target:  5'- cUGGgACGGCGACGACgaggAGCGc-GACGa -3'
miRNA:   3'- cACCaUGCUGCUGCUG----UCGCuaCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.