miRNA display CGI


Results 61 - 80 of 246 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13937 5' -52.8 NC_003521.1 + 167705 0.66 0.993501
Target:  5'- cGUGGaggaGGCGGCGguaGCAGCGGUaGugGu -3'
miRNA:   3'- -CACCaug-CUGCUGC---UGUCGCUA-CugC- -5'
13937 5' -52.8 NC_003521.1 + 167529 0.71 0.910404
Target:  5'- gGUGGUGacgacaGACGGCGAUAGaGcgGACGu -3'
miRNA:   3'- -CACCAUg-----CUGCUGCUGUCgCuaCUGC- -5'
13937 5' -52.8 NC_003521.1 + 166834 0.67 0.990349
Target:  5'- ----gGCGACGACGgugaggauacGCAgGCGGUGGCGc -3'
miRNA:   3'- caccaUGCUGCUGC----------UGU-CGCUACUGC- -5'
13937 5' -52.8 NC_003521.1 + 164904 0.67 0.992559
Target:  5'- cGUGaugACGACGACGAUgAG-GAUGACc -3'
miRNA:   3'- -CACca-UGCUGCUGCUG-UCgCUACUGc -5'
13937 5' -52.8 NC_003521.1 + 164874 0.81 0.442664
Target:  5'- gGUGGUAUGAgUGGCGGCGGCcGGUGGCGu -3'
miRNA:   3'- -CACCAUGCU-GCUGCUGUCG-CUACUGC- -5'
13937 5' -52.8 NC_003521.1 + 164767 0.67 0.986106
Target:  5'- -aGGUgGCGGCGACaGCuGCGGaGGCGa -3'
miRNA:   3'- caCCA-UGCUGCUGcUGuCGCUaCUGC- -5'
13937 5' -52.8 NC_003521.1 + 164734 0.83 0.383091
Target:  5'- -cGGcUGCGGCGGCGGCAGCGGcgaccgUGACGg -3'
miRNA:   3'- caCC-AUGCUGCUGCUGUCGCU------ACUGC- -5'
13937 5' -52.8 NC_003521.1 + 164675 0.75 0.779889
Target:  5'- cGUGGUGaaccccgUGACGACGAggcCGGCGGcUGACGa -3'
miRNA:   3'- -CACCAU-------GCUGCUGCU---GUCGCU-ACUGC- -5'
13937 5' -52.8 NC_003521.1 + 164058 0.67 0.992559
Target:  5'- -cGGU-UGAgGcCGGCGGUGGUGGCGc -3'
miRNA:   3'- caCCAuGCUgCuGCUGUCGCUACUGC- -5'
13937 5' -52.8 NC_003521.1 + 163905 0.71 0.916183
Target:  5'- -cGGUGCGuuacucggguGCGGCGGCAGCGGcaACGa -3'
miRNA:   3'- caCCAUGC----------UGCUGCUGUCGCUacUGC- -5'
13937 5' -52.8 NC_003521.1 + 163199 0.7 0.957931
Target:  5'- gGUGGU--GGCGGCGGCAGCGGcaguagcuccGGCGg -3'
miRNA:   3'- -CACCAugCUGCUGCUGUCGCUa---------CUGC- -5'
13937 5' -52.8 NC_003521.1 + 162778 0.74 0.80739
Target:  5'- cGUGGUggACuGCGugGACGGCGAaGGCa -3'
miRNA:   3'- -CACCA--UGcUGCugCUGUCGCUaCUGc -5'
13937 5' -52.8 NC_003521.1 + 160605 0.68 0.976042
Target:  5'- -aGG-ACGACGACGAUAaCGAcGACa -3'
miRNA:   3'- caCCaUGCUGCUGCUGUcGCUaCUGc -5'
13937 5' -52.8 NC_003521.1 + 160545 0.7 0.957931
Target:  5'- -cGaGUACGACGACGACGGCuaccaccaGGCa -3'
miRNA:   3'- caC-CAUGCUGCUGCUGUCGcua-----CUGc -5'
13937 5' -52.8 NC_003521.1 + 160448 0.69 0.970796
Target:  5'- -aGGcGCGACGgcACGGCAGagGAUGAUGu -3'
miRNA:   3'- caCCaUGCUGC--UGCUGUCg-CUACUGC- -5'
13937 5' -52.8 NC_003521.1 + 157949 0.67 0.992559
Target:  5'- cGUGGccugagGCugGGCGACGACGGCGcUGguaGCGa -3'
miRNA:   3'- -CACCa-----UG--CUGCUGCUGUCGCuAC---UGC- -5'
13937 5' -52.8 NC_003521.1 + 157498 0.68 0.980562
Target:  5'- uUGGUcgGACcucGCGGCGGCGuAUGACGg -3'
miRNA:   3'- cACCAugCUGc--UGCUGUCGC-UACUGC- -5'
13937 5' -52.8 NC_003521.1 + 157217 0.66 0.996362
Target:  5'- cGUGGUGCGuuuguccuugaGCGcGCGACaaauguacggGGUGAUGGCc -3'
miRNA:   3'- -CACCAUGC-----------UGC-UGCUG----------UCGCUACUGc -5'
13937 5' -52.8 NC_003521.1 + 156492 0.67 0.992559
Target:  5'- uGUGGU-CGACcagcuCGGCGuCGGUGACGg -3'
miRNA:   3'- -CACCAuGCUGcu---GCUGUcGCUACUGC- -5'
13937 5' -52.8 NC_003521.1 + 156330 0.67 0.989067
Target:  5'- -cGG-GCG-CGGCGGCGGCGAcguuguUGGCa -3'
miRNA:   3'- caCCaUGCuGCUGCUGUCGCU------ACUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.