miRNA display CGI


Results 81 - 100 of 246 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13937 5' -52.8 NC_003521.1 + 156151 0.66 0.993501
Target:  5'- -cGG-ACGAuucCGACGACGGUGGcgaGGCGg -3'
miRNA:   3'- caCCaUGCU---GCUGCUGUCGCUa--CUGC- -5'
13937 5' -52.8 NC_003521.1 + 155999 0.73 0.863764
Target:  5'- -cGGUACGGCGAaacucccccauCGGCGGCGGcagcGGCGg -3'
miRNA:   3'- caCCAUGCUGCU-----------GCUGUCGCUa---CUGC- -5'
13937 5' -52.8 NC_003521.1 + 154388 0.76 0.714666
Target:  5'- -cGGgccgcgGCGGCGACGACgaGGCGGUGAuCGa -3'
miRNA:   3'- caCCa-----UGCUGCUGCUG--UCGCUACU-GC- -5'
13937 5' -52.8 NC_003521.1 + 153113 0.67 0.992559
Target:  5'- -gGGcGCGcGCGACGGCAGCa--GGCGg -3'
miRNA:   3'- caCCaUGC-UGCUGCUGUCGcuaCUGC- -5'
13937 5' -52.8 NC_003521.1 + 151439 0.67 0.989067
Target:  5'- cGUGcGUACcguGCGGCGACAG--GUGACGa -3'
miRNA:   3'- -CAC-CAUGc--UGCUGCUGUCgcUACUGC- -5'
13937 5' -52.8 NC_003521.1 + 151364 0.75 0.743587
Target:  5'- gGUGGaagACGugGgcACGGgGGCGGUGACGg -3'
miRNA:   3'- -CACCa--UGCugC--UGCUgUCGCUACUGC- -5'
13937 5' -52.8 NC_003521.1 + 151256 0.7 0.94164
Target:  5'- cUGGgACGGCGACGACgaggAGCGc-GACGa -3'
miRNA:   3'- cACCaUGCUGCUGCUG----UCGCuaCUGC- -5'
13937 5' -52.8 NC_003521.1 + 151171 0.66 0.995769
Target:  5'- cGUGGaAgGGCG-CG-CAGuCGAUGACGc -3'
miRNA:   3'- -CACCaUgCUGCuGCuGUC-GCUACUGC- -5'
13937 5' -52.8 NC_003521.1 + 150696 0.66 0.994346
Target:  5'- -gGGUGCugcuGCGcCGGCGGCGAcUGGCu -3'
miRNA:   3'- caCCAUGc---UGCuGCUGUCGCU-ACUGc -5'
13937 5' -52.8 NC_003521.1 + 150556 0.8 0.526276
Target:  5'- gGUGGUGCGGguggUGGCGGCGGCGgcGGCGc -3'
miRNA:   3'- -CACCAUGCU----GCUGCUGUCGCuaCUGC- -5'
13937 5' -52.8 NC_003521.1 + 150317 0.67 0.989067
Target:  5'- -aGGU-CGACGAUGaccacccgguGCAGCG-UGGCGu -3'
miRNA:   3'- caCCAuGCUGCUGC----------UGUCGCuACUGC- -5'
13937 5' -52.8 NC_003521.1 + 148422 0.66 0.996362
Target:  5'- aUGGUGCG--GGCGGCcGCGccGGCGg -3'
miRNA:   3'- cACCAUGCugCUGCUGuCGCuaCUGC- -5'
13937 5' -52.8 NC_003521.1 + 146642 0.74 0.80739
Target:  5'- -aGGgccccgGCcACGACGACGGCGAggagGACGg -3'
miRNA:   3'- caCCa-----UGcUGCUGCUGUCGCUa---CUGC- -5'
13937 5' -52.8 NC_003521.1 + 145870 0.68 0.978389
Target:  5'- -gGGUGCGACuGCaGCAGCGA-GGCc -3'
miRNA:   3'- caCCAUGCUGcUGcUGUCGCUaCUGc -5'
13937 5' -52.8 NC_003521.1 + 145862 0.71 0.921733
Target:  5'- cUGGgccCGGCGGCgGGCGGCGccGACGa -3'
miRNA:   3'- cACCau-GCUGCUG-CUGUCGCuaCUGC- -5'
13937 5' -52.8 NC_003521.1 + 145587 0.68 0.980562
Target:  5'- -cGGcACGACG-CGGCGGCcGUGGCc -3'
miRNA:   3'- caCCaUGCUGCuGCUGUCGcUACUGc -5'
13937 5' -52.8 NC_003521.1 + 143837 0.66 0.993502
Target:  5'- -cGGUA-GACGcccgugccCGcCAGCGAUGGCGg -3'
miRNA:   3'- caCCAUgCUGCu-------GCuGUCGCUACUGC- -5'
13937 5' -52.8 NC_003521.1 + 143117 0.67 0.987655
Target:  5'- -aGG-ACGACGAgucggccaccacCGACGGCGAgggagugGGCGu -3'
miRNA:   3'- caCCaUGCUGCU------------GCUGUCGCUa------CUGC- -5'
13937 5' -52.8 NC_003521.1 + 142791 0.68 0.982567
Target:  5'- -cGGUGCcACcaACGGCGGUGGUGGCa -3'
miRNA:   3'- caCCAUGcUGc-UGCUGUCGCUACUGc -5'
13937 5' -52.8 NC_003521.1 + 142771 0.72 0.885047
Target:  5'- aGUGGUgGCGGCGgccACGACGGUGGUuGCGc -3'
miRNA:   3'- -CACCA-UGCUGC---UGCUGUCGCUAcUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.