miRNA display CGI


Results 101 - 120 of 246 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13937 5' -52.8 NC_003521.1 + 142733 0.69 0.970796
Target:  5'- uGUGGUccuucgaguACGaagGCGACGACGG-GGUGACc -3'
miRNA:   3'- -CACCA---------UGC---UGCUGCUGUCgCUACUGc -5'
13937 5' -52.8 NC_003521.1 + 142689 0.67 0.991511
Target:  5'- cUGGUGC--CGACGcUGGUGGUGACGu -3'
miRNA:   3'- cACCAUGcuGCUGCuGUCGCUACUGC- -5'
13937 5' -52.8 NC_003521.1 + 142622 0.71 0.916183
Target:  5'- -aGGagGCGGCGGCGGCcgcGGCGGccgUGGCGg -3'
miRNA:   3'- caCCa-UGCUGCUGCUG---UCGCU---ACUGC- -5'
13937 5' -52.8 NC_003521.1 + 142442 0.71 0.932145
Target:  5'- -cGGUagcgGCGuCGACGACGGCGAgcuUGcGCGg -3'
miRNA:   3'- caCCA----UGCuGCUGCUGUCGCU---AC-UGC- -5'
13937 5' -52.8 NC_003521.1 + 141361 0.77 0.655229
Target:  5'- -gGGUGCGGCGGCGGuCGGUGAcgcggugcccgaUGACGa -3'
miRNA:   3'- caCCAUGCUGCUGCU-GUCGCU------------ACUGC- -5'
13937 5' -52.8 NC_003521.1 + 139787 0.68 0.984413
Target:  5'- -gGGUuuGGCGuCGcccuCGGCGGUGGCGa -3'
miRNA:   3'- caCCAugCUGCuGCu---GUCGCUACUGC- -5'
13937 5' -52.8 NC_003521.1 + 137252 0.75 0.780796
Target:  5'- -gGGgcCGACGGCGGCAGCGGgcagaGCGg -3'
miRNA:   3'- caCCauGCUGCUGCUGUCGCUac---UGC- -5'
13937 5' -52.8 NC_003521.1 + 136932 0.71 0.937006
Target:  5'- -cGGUGCucuGCGGCGGCGGCGcgGGuCGc -3'
miRNA:   3'- caCCAUGc--UGCUGCUGUCGCuaCU-GC- -5'
13937 5' -52.8 NC_003521.1 + 134174 0.75 0.771664
Target:  5'- -aGGUgGCcAUGAUGACGGCGAUGAUGa -3'
miRNA:   3'- caCCA-UGcUGCUGCUGUCGCUACUGC- -5'
13937 5' -52.8 NC_003521.1 + 133225 0.67 0.991511
Target:  5'- -gGGUucaGgGGCGAUGGCGGuCGAgGACGa -3'
miRNA:   3'- caCCA---UgCUGCUGCUGUC-GCUaCUGC- -5'
13937 5' -52.8 NC_003521.1 + 133056 0.68 0.978389
Target:  5'- -cGGcgucaGGCGGCGGCGG-GAUGACGc -3'
miRNA:   3'- caCCaug--CUGCUGCUGUCgCUACUGC- -5'
13937 5' -52.8 NC_003521.1 + 132827 0.71 0.930641
Target:  5'- cUGGUgucgaccggagaagACGGCGGCaccgagGGCGGUGGUGGCGg -3'
miRNA:   3'- cACCA--------------UGCUGCUG------CUGUCGCUACUGC- -5'
13937 5' -52.8 NC_003521.1 + 132425 0.66 0.996362
Target:  5'- --uGUGCGGCGACGccgcugguaGCGGUGGUGGg- -3'
miRNA:   3'- cacCAUGCUGCUGC---------UGUCGCUACUgc -5'
13937 5' -52.8 NC_003521.1 + 131682 0.69 0.970796
Target:  5'- uUGGUGuugaaGGCGuuGACGGCGAUG-CGg -3'
miRNA:   3'- cACCAUg----CUGCugCUGUCGCUACuGC- -5'
13937 5' -52.8 NC_003521.1 + 131217 0.7 0.956831
Target:  5'- -gGGgcCGGCGccagagacagcgucGCGACGGCGAUGcCGa -3'
miRNA:   3'- caCCauGCUGC--------------UGCUGUCGCUACuGC- -5'
13937 5' -52.8 NC_003521.1 + 131045 0.76 0.724385
Target:  5'- cUGG-GCGGCGGCGGCGggccucuggacGCGGUGGCGg -3'
miRNA:   3'- cACCaUGCUGCUGCUGU-----------CGCUACUGC- -5'
13937 5' -52.8 NC_003521.1 + 130401 0.67 0.989067
Target:  5'- -cGGUgGCGGCaGCGGCGGCGccgccGACGa -3'
miRNA:   3'- caCCA-UGCUGcUGCUGUCGCua---CUGC- -5'
13937 5' -52.8 NC_003521.1 + 130016 0.74 0.815961
Target:  5'- -cGGUagaggGCGGCGAaGACGGCGcgGACGc -3'
miRNA:   3'- caCCA-----UGCUGCUgCUGUCGCuaCUGC- -5'
13937 5' -52.8 NC_003521.1 + 129580 0.67 0.992559
Target:  5'- -cGGgcUGGCGGCGGCGGCGc--ACGc -3'
miRNA:   3'- caCCauGCUGCUGCUGUCGCuacUGC- -5'
13937 5' -52.8 NC_003521.1 + 129208 0.66 0.994346
Target:  5'- gGUGGUcuggcGCGugGugGGCAGUcc-GGCGc -3'
miRNA:   3'- -CACCA-----UGCugCugCUGUCGcuaCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.