miRNA display CGI


Results 121 - 140 of 246 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13937 5' -52.8 NC_003521.1 + 128259 0.67 0.992559
Target:  5'- -aGGUAggcCGugGugGGCAGCGcguugcgGAUGg -3'
miRNA:   3'- caCCAU---GCugCugCUGUCGCua-----CUGC- -5'
13937 5' -52.8 NC_003521.1 + 127368 0.67 0.990349
Target:  5'- cGUGGUGCG-CGGCaGguGCG-UGAUGa -3'
miRNA:   3'- -CACCAUGCuGCUGcUguCGCuACUGC- -5'
13937 5' -52.8 NC_003521.1 + 127318 0.73 0.84068
Target:  5'- -aGGcGCGuCGACGACGGCGAcGGCc -3'
miRNA:   3'- caCCaUGCuGCUGCUGUCGCUaCUGc -5'
13937 5' -52.8 NC_003521.1 + 127232 0.7 0.957931
Target:  5'- -cGGc-CGGCGACGACGGCGcgGGu- -3'
miRNA:   3'- caCCauGCUGCUGCUGUCGCuaCUgc -5'
13937 5' -52.8 NC_003521.1 + 125519 0.66 0.994019
Target:  5'- cGUGGUGCuGAgGAuCGGCAGCGcuuccugcgucaGACGg -3'
miRNA:   3'- -CACCAUG-CUgCU-GCUGUCGCua----------CUGC- -5'
13937 5' -52.8 NC_003521.1 + 124447 0.66 0.996362
Target:  5'- cGUGGUugGGCcGCGGCGGCac--GCGu -3'
miRNA:   3'- -CACCAugCUGcUGCUGUCGcuacUGC- -5'
13937 5' -52.8 NC_003521.1 + 124408 0.7 0.957931
Target:  5'- -cGGcaGCGGCGGCGgaggcaGCGGCGcgGGCGg -3'
miRNA:   3'- caCCa-UGCUGCUGC------UGUCGCuaCUGC- -5'
13937 5' -52.8 NC_003521.1 + 124089 0.66 0.993851
Target:  5'- -cGGgccCGACGGCGugGGCGGgaagcagcgcgucgcUGugGu -3'
miRNA:   3'- caCCau-GCUGCUGCugUCGCU---------------ACugC- -5'
13937 5' -52.8 NC_003521.1 + 123764 0.69 0.964774
Target:  5'- -cGGcagcgGCGACGACGACaccccgccGGCGAcgGACa -3'
miRNA:   3'- caCCa----UGCUGCUGCUG--------UCGCUa-CUGc -5'
13937 5' -52.8 NC_003521.1 + 123269 0.7 0.94941
Target:  5'- cUGGUACagcgugaGCGACGACAGCGucagguccgcgGGCGa -3'
miRNA:   3'- cACCAUGc------UGCUGCUGUCGCua---------CUGC- -5'
13937 5' -52.8 NC_003521.1 + 123096 0.74 0.807391
Target:  5'- -cGGUcaggACGACGACGGUAGCGgcGGCGu -3'
miRNA:   3'- caCCA----UGCUGCUGCUGUCGCuaCUGC- -5'
13937 5' -52.8 NC_003521.1 + 118921 0.68 0.982567
Target:  5'- -cGGcGCcGCGGCGugGGCGgcGGCGu -3'
miRNA:   3'- caCCaUGcUGCUGCugUCGCuaCUGC- -5'
13937 5' -52.8 NC_003521.1 + 118475 0.66 0.994346
Target:  5'- -cGGcgACGGCGGCGGCcGCGcgcucGGCGg -3'
miRNA:   3'- caCCa-UGCUGCUGCUGuCGCua---CUGC- -5'
13937 5' -52.8 NC_003521.1 + 118360 0.76 0.695034
Target:  5'- cGUGGU-CGugGGCGACGGCgccgccGAUGGCu -3'
miRNA:   3'- -CACCAuGCugCUGCUGUCG------CUACUGc -5'
13937 5' -52.8 NC_003521.1 + 118101 0.67 0.992559
Target:  5'- -cGG-ACGAgGACGACuGCGA-GGCc -3'
miRNA:   3'- caCCaUGCUgCUGCUGuCGCUaCUGc -5'
13937 5' -52.8 NC_003521.1 + 117930 0.76 0.724386
Target:  5'- gGUGGUGCugcugcugagguGGCGGCGGCGGCGGggGACc -3'
miRNA:   3'- -CACCAUG------------CUGCUGCUGUCGCUa-CUGc -5'
13937 5' -52.8 NC_003521.1 + 117871 0.71 0.916183
Target:  5'- -gGGUAgGACGGgGGCGGCGGUagGugGu -3'
miRNA:   3'- caCCAUgCUGCUgCUGUCGCUA--CugC- -5'
13937 5' -52.8 NC_003521.1 + 117668 0.66 0.996362
Target:  5'- -gGGcACGGCacCGACGGCGGgauagGACGg -3'
miRNA:   3'- caCCaUGCUGcuGCUGUCGCUa----CUGC- -5'
13937 5' -52.8 NC_003521.1 + 117536 0.8 0.488265
Target:  5'- -cGGcaccACGGcCGACGACGGCGGUGGCGg -3'
miRNA:   3'- caCCa---UGCU-GCUGCUGUCGCUACUGC- -5'
13937 5' -52.8 NC_003521.1 + 117446 0.71 0.937006
Target:  5'- ------gGGCGGCGGCAGCGAcGGCGg -3'
miRNA:   3'- caccaugCUGCUGCUGUCGCUaCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.