miRNA display CGI


Results 141 - 160 of 246 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13937 5' -52.8 NC_003521.1 + 117388 0.67 0.989067
Target:  5'- gGUGGaagaggagGCGGCGGCugaGCGGCGGaGGCGg -3'
miRNA:   3'- -CACCa-------UGCUGCUGc--UGUCGCUaCUGC- -5'
13937 5' -52.8 NC_003521.1 + 116881 0.71 0.921733
Target:  5'- aGUGGcGCGGCuGCGGCGGCGcgccGGCGg -3'
miRNA:   3'- -CACCaUGCUGcUGCUGUCGCua--CUGC- -5'
13937 5' -52.8 NC_003521.1 + 116481 0.75 0.7898
Target:  5'- -aGG-ACGACGaaGCGGCGGCGAcGGCGa -3'
miRNA:   3'- caCCaUGCUGC--UGCUGUCGCUaCUGC- -5'
13937 5' -52.8 NC_003521.1 + 116469 0.72 0.891718
Target:  5'- cGUGGUgggacacgugGCGGCGAUGAagAGCGuccGUGACGg -3'
miRNA:   3'- -CACCA----------UGCUGCUGCUg-UCGC---UACUGC- -5'
13937 5' -52.8 NC_003521.1 + 116406 0.78 0.62516
Target:  5'- uUGGUugGGuaGCGGCGGCGAUGGCa -3'
miRNA:   3'- cACCAugCUgcUGCUGUCGCUACUGc -5'
13937 5' -52.8 NC_003521.1 + 115369 0.76 0.704879
Target:  5'- -cGGUcACGACGGgGGCGGCGAcGGCGc -3'
miRNA:   3'- caCCA-UGCUGCUgCUGUCGCUaCUGC- -5'
13937 5' -52.8 NC_003521.1 + 114786 0.66 0.994346
Target:  5'- aUGGUGCccgUGGCGGCGGUGGgcacGGCGg -3'
miRNA:   3'- cACCAUGcu-GCUGCUGUCGCUa---CUGC- -5'
13937 5' -52.8 NC_003521.1 + 105852 0.75 0.7898
Target:  5'- -cGGcUGCGcCGGCGGCGGCGAcGACa -3'
miRNA:   3'- caCC-AUGCuGCUGCUGUCGCUaCUGc -5'
13937 5' -52.8 NC_003521.1 + 103687 0.67 0.992559
Target:  5'- -aGGUGCuGAUGAaccaCGACGGUGAcGugGg -3'
miRNA:   3'- caCCAUG-CUGCU----GCUGUCGCUaCugC- -5'
13937 5' -52.8 NC_003521.1 + 103547 0.7 0.94164
Target:  5'- gGUGGccUACGACGA-GACGGCGccGGCc -3'
miRNA:   3'- -CACC--AUGCUGCUgCUGUCGCuaCUGc -5'
13937 5' -52.8 NC_003521.1 + 102766 0.72 0.898169
Target:  5'- -cGGUagaGCGGCaGCGGCugcGCGAUGACGc -3'
miRNA:   3'- caCCA---UGCUGcUGCUGu--CGCUACUGC- -5'
13937 5' -52.8 NC_003521.1 + 102338 0.67 0.990349
Target:  5'- cGUGG-GCGcCGACGcCGG-GGUGGCGg -3'
miRNA:   3'- -CACCaUGCuGCUGCuGUCgCUACUGC- -5'
13937 5' -52.8 NC_003521.1 + 100535 0.76 0.714666
Target:  5'- gGUGGcUGCuGCGGCGGCGGCGgcGACa -3'
miRNA:   3'- -CACC-AUGcUGCUGCUGUCGCuaCUGc -5'
13937 5' -52.8 NC_003521.1 + 99985 0.66 0.995769
Target:  5'- -aGGUugGGCGuguugaaGACGGCGAaGAUc -3'
miRNA:   3'- caCCAugCUGCug-----CUGUCGCUaCUGc -5'
13937 5' -52.8 NC_003521.1 + 99312 0.76 0.734028
Target:  5'- gGUGGUGCGACuucGCGccCAGgGAUGACGg -3'
miRNA:   3'- -CACCAUGCUGc--UGCu-GUCgCUACUGC- -5'
13937 5' -52.8 NC_003521.1 + 99265 0.68 0.984413
Target:  5'- gGUGGUACcugaggauugaGACGuCGG-AGCGAUGGCu -3'
miRNA:   3'- -CACCAUG-----------CUGCuGCUgUCGCUACUGc -5'
13937 5' -52.8 NC_003521.1 + 98958 0.67 0.987655
Target:  5'- gGUGGUgGCGgcuaGCGACGGCGGCGccuuuaggaGGCGu -3'
miRNA:   3'- -CACCA-UGC----UGCUGCUGUCGCua-------CUGC- -5'
13937 5' -52.8 NC_003521.1 + 95879 0.66 0.994346
Target:  5'- cUGGcUGCGugGAgaGACGGCGggGAa- -3'
miRNA:   3'- cACC-AUGCugCUg-CUGUCGCuaCUgc -5'
13937 5' -52.8 NC_003521.1 + 93695 0.67 0.990349
Target:  5'- -gGGUGCGA-GAUGGCggaucgcguGGCGGUGAgGa -3'
miRNA:   3'- caCCAUGCUgCUGCUG---------UCGCUACUgC- -5'
13937 5' -52.8 NC_003521.1 + 93287 0.69 0.964774
Target:  5'- -gGGUGCGGCuACGGCGGCua-GACGc -3'
miRNA:   3'- caCCAUGCUGcUGCUGUCGcuaCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.