miRNA display CGI


Results 81 - 100 of 246 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13937 5' -52.8 NC_003521.1 + 170340 0.7 0.957931
Target:  5'- uUGGaagACGugG-CGGCAGCGGUGGu- -3'
miRNA:   3'- cACCa--UGCugCuGCUGUCGCUACUgc -5'
13937 5' -52.8 NC_003521.1 + 87380 0.69 0.961457
Target:  5'- gGUGGaggACGA-GGCGGCGGaGGUGACGc -3'
miRNA:   3'- -CACCa--UGCUgCUGCUGUCgCUACUGC- -5'
13937 5' -52.8 NC_003521.1 + 91939 0.69 0.961457
Target:  5'- gGUGGacccgGCGGCGGaccccgUGGCGGCGAgGGCGg -3'
miRNA:   3'- -CACCa----UGCUGCU------GCUGUCGCUaCUGC- -5'
13937 5' -52.8 NC_003521.1 + 76089 0.69 0.964774
Target:  5'- -aGGUugGACuGGCGguACAGCGA-GAUGu -3'
miRNA:   3'- caCCAugCUG-CUGC--UGUCGCUaCUGC- -5'
13937 5' -52.8 NC_003521.1 + 76673 0.69 0.966665
Target:  5'- -cGGUAuguggcgaugaagcCGACGACGGguccgugUAGCGGUGGCa -3'
miRNA:   3'- caCCAU--------------GCUGCUGCU-------GUCGCUACUGc -5'
13937 5' -52.8 NC_003521.1 + 351 0.69 0.967885
Target:  5'- -aGGgcaaACGAUGugGGCGGCGugcUGugGa -3'
miRNA:   3'- caCCa---UGCUGCugCUGUCGCu--ACugC- -5'
13937 5' -52.8 NC_003521.1 + 142733 0.69 0.970796
Target:  5'- uGUGGUccuucgaguACGaagGCGACGACGG-GGUGACc -3'
miRNA:   3'- -CACCA---------UGC---UGCUGCUGUCgCUACUGc -5'
13937 5' -52.8 NC_003521.1 + 123269 0.7 0.94941
Target:  5'- cUGGUACagcgugaGCGACGACAGCGucagguccgcgGGCGa -3'
miRNA:   3'- cACCAUGc------UGCUGCUGUCGCua---------CUGC- -5'
13937 5' -52.8 NC_003521.1 + 44899 0.7 0.946047
Target:  5'- -cGGaucucagACGGCG-CGGCGGCGAgGACGa -3'
miRNA:   3'- caCCa------UGCUGCuGCUGUCGCUaCUGC- -5'
13937 5' -52.8 NC_003521.1 + 151256 0.7 0.94164
Target:  5'- cUGGgACGGCGACGACgaggAGCGc-GACGa -3'
miRNA:   3'- cACCaUGCUGCUGCUG----UCGCuaCUGC- -5'
13937 5' -52.8 NC_003521.1 + 167529 0.71 0.910404
Target:  5'- gGUGGUGacgacaGACGGCGAUAGaGcgGACGu -3'
miRNA:   3'- -CACCAUg-----CUGCUGCUGUCgCuaCUGC- -5'
13937 5' -52.8 NC_003521.1 + 216291 0.71 0.910404
Target:  5'- cGUGGagcggACGACGuuGGCGGgGGUGAUGu -3'
miRNA:   3'- -CACCa----UGCUGCugCUGUCgCUACUGC- -5'
13937 5' -52.8 NC_003521.1 + 163905 0.71 0.916183
Target:  5'- -cGGUGCGuuacucggguGCGGCGGCAGCGGcaACGa -3'
miRNA:   3'- caCCAUGC----------UGCUGCUGUCGCUacUGC- -5'
13937 5' -52.8 NC_003521.1 + 116881 0.71 0.921733
Target:  5'- aGUGGcGCGGCuGCGGCGGCGcgccGGCGg -3'
miRNA:   3'- -CACCaUGCUGcUGCUGUCGCua--CUGC- -5'
13937 5' -52.8 NC_003521.1 + 145862 0.71 0.921733
Target:  5'- cUGGgccCGGCGGCgGGCGGCGccGACGa -3'
miRNA:   3'- cACCau-GCUGCUG-CUGUCGCuaCUGC- -5'
13937 5' -52.8 NC_003521.1 + 31071 0.71 0.929117
Target:  5'- aUGGUgagaaccggccaacaGCGACGACGGCGGCGGccgGuACa -3'
miRNA:   3'- cACCA---------------UGCUGCUGCUGUCGCUa--C-UGc -5'
13937 5' -52.8 NC_003521.1 + 39192 0.71 0.932144
Target:  5'- ----cGCGACGACGACGGuCGggGACc -3'
miRNA:   3'- caccaUGCUGCUGCUGUC-GCuaCUGc -5'
13937 5' -52.8 NC_003521.1 + 168540 0.71 0.932144
Target:  5'- -cGGccaGCG-CGGCGGCGGCGcUGGCGg -3'
miRNA:   3'- caCCa--UGCuGCUGCUGUCGCuACUGC- -5'
13937 5' -52.8 NC_003521.1 + 207425 0.71 0.93842
Target:  5'- aUGGUcgguagccagggagaGCGGCGGCuGGCGGCGugugugaGUGACGg -3'
miRNA:   3'- cACCA---------------UGCUGCUG-CUGUCGC-------UACUGC- -5'
13937 5' -52.8 NC_003521.1 + 160448 0.69 0.970796
Target:  5'- -aGGcGCGACGgcACGGCAGagGAUGAUGu -3'
miRNA:   3'- caCCaUGCUGC--UGCUGUCg-CUACUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.