Results 121 - 140 of 246 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13937 | 5' | -52.8 | NC_003521.1 | + | 17364 | 0.76 | 0.714666 |
Target: 5'- -gGGUACGACGGCGGgucCGGUGGCGg -3' miRNA: 3'- caCCAUGCUGCUGCUgucGCUACUGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 154388 | 0.76 | 0.714666 |
Target: 5'- -cGGgccgcgGCGGCGACGACgaGGCGGUGAuCGa -3' miRNA: 3'- caCCa-----UGCUGCUGCUG--UCGCUACU-GC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 117930 | 0.76 | 0.724386 |
Target: 5'- gGUGGUGCugcugcugagguGGCGGCGGCGGCGGggGACc -3' miRNA: 3'- -CACCAUG------------CUGCUGCUGUCGCUa-CUGc -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 151364 | 0.75 | 0.743587 |
Target: 5'- gGUGGaagACGugGgcACGGgGGCGGUGACGg -3' miRNA: 3'- -CACCa--UGCugC--UGCUgUCGCUACUGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 71645 | 0.75 | 0.753051 |
Target: 5'- -cGG-ACGACGGCGuCGGCGgcGGCGg -3' miRNA: 3'- caCCaUGCUGCUGCuGUCGCuaCUGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 36395 | 0.75 | 0.753051 |
Target: 5'- -gGGU-CGACGAgGGCAGCGAggUGACc -3' miRNA: 3'- caCCAuGCUGCUgCUGUCGCU--ACUGc -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 85834 | 0.75 | 0.771665 |
Target: 5'- gGUGGgggGCGGCGGCGGCGGCGccucaGGCc -3' miRNA: 3'- -CACCa--UGCUGCUGCUGUCGCua---CUGc -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 180804 | 0.77 | 0.655229 |
Target: 5'- -cGGUACGccGCGGaGACGGUGGUGACGa -3' miRNA: 3'- caCCAUGC--UGCUgCUGUCGCUACUGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 54469 | 0.79 | 0.575239 |
Target: 5'- -gGGcUACG-CGGCGGCGGUGGUGGCGg -3' miRNA: 3'- caCC-AUGCuGCUGCUGUCGCUACUGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 157217 | 0.66 | 0.996362 |
Target: 5'- cGUGGUGCGuuuguccuugaGCGcGCGACaaauguacggGGUGAUGGCc -3' miRNA: 3'- -CACCAUGC-----------UGC-UGCUG----------UCGCUACUGc -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 164734 | 0.83 | 0.383091 |
Target: 5'- -cGGcUGCGGCGGCGGCAGCGGcgaccgUGACGg -3' miRNA: 3'- caCC-AUGCUGCUGCUGUCGCU------ACUGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 164874 | 0.81 | 0.442664 |
Target: 5'- gGUGGUAUGAgUGGCGGCGGCcGGUGGCGu -3' miRNA: 3'- -CACCAUGCU-GCUGCUGUCG-CUACUGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 30666 | 0.81 | 0.460624 |
Target: 5'- cGUGGU-CGGCGugGGCGGCGAcGGCa -3' miRNA: 3'- -CACCAuGCUGCugCUGUCGCUaCUGc -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 211888 | 0.81 | 0.460624 |
Target: 5'- -cGGUACGACGGCGGuguCAGCGAaGACa -3' miRNA: 3'- caCCAUGCUGCUGCU---GUCGCUaCUGc -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 117536 | 0.8 | 0.488265 |
Target: 5'- -cGGcaccACGGcCGACGACGGCGGUGGCGg -3' miRNA: 3'- caCCa---UGCU-GCUGCUGUCGCUACUGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 169213 | 0.8 | 0.488265 |
Target: 5'- -gGGaGCGACGGCGACAGCGgcGGCc -3' miRNA: 3'- caCCaUGCUGCUGCUGUCGCuaCUGc -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 72713 | 0.8 | 0.497653 |
Target: 5'- -aGGUagacgacagucGCGACGACGACGGCGAgGACu -3' miRNA: 3'- caCCA-----------UGCUGCUGCUGUCGCUaCUGc -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 41614 | 0.8 | 0.497653 |
Target: 5'- -aGGUGCGACGguggaugacGCGAUAGCGAUcGGCGg -3' miRNA: 3'- caCCAUGCUGC---------UGCUGUCGCUA-CUGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 190297 | 0.8 | 0.516662 |
Target: 5'- cUGGU-CGAuCGGCGACGGUGAUGGCa -3' miRNA: 3'- cACCAuGCU-GCUGCUGUCGCUACUGc -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 224035 | 0.8 | 0.516662 |
Target: 5'- -cGGUaACGGCGcCGACAGCGAgGACGa -3' miRNA: 3'- caCCA-UGCUGCuGCUGUCGCUaCUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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