miRNA display CGI


Results 61 - 80 of 246 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13937 5' -52.8 NC_003521.1 + 4621 0.73 0.871066
Target:  5'- -cGGgccGCGAUGAgcgaaccgcCGGCGGCGGUGGCGc -3'
miRNA:   3'- caCCa--UGCUGCU---------GCUGUCGCUACUGC- -5'
13937 5' -52.8 NC_003521.1 + 171362 0.72 0.891718
Target:  5'- -aGGUACGcgguaACGGCGggcggggagGCGGCGGUGGCa -3'
miRNA:   3'- caCCAUGC-----UGCUGC---------UGUCGCUACUGc -5'
13937 5' -52.8 NC_003521.1 + 117536 0.8 0.488265
Target:  5'- -cGGcaccACGGcCGACGACGGCGGUGGCGg -3'
miRNA:   3'- caCCa---UGCU-GCUGCUGUCGCUACUGC- -5'
13937 5' -52.8 NC_003521.1 + 41614 0.8 0.497653
Target:  5'- -aGGUGCGACGguggaugacGCGAUAGCGAUcGGCGg -3'
miRNA:   3'- caCCAUGCUGC---------UGCUGUCGCUA-CUGC- -5'
13937 5' -52.8 NC_003521.1 + 180804 0.77 0.655229
Target:  5'- -cGGUACGccGCGGaGACGGUGGUGACGa -3'
miRNA:   3'- caCCAUGC--UGCUgCUGUCGCUACUGC- -5'
13937 5' -52.8 NC_003521.1 + 115369 0.76 0.704879
Target:  5'- -cGGUcACGACGGgGGCGGCGAcGGCGc -3'
miRNA:   3'- caCCA-UGCUGCUgCUGUCGCUaCUGC- -5'
13937 5' -52.8 NC_003521.1 + 151364 0.75 0.743587
Target:  5'- gGUGGaagACGugGgcACGGgGGCGGUGACGg -3'
miRNA:   3'- -CACCa--UGCugC--UGCUgUCGCUACUGC- -5'
13937 5' -52.8 NC_003521.1 + 85834 0.75 0.771665
Target:  5'- gGUGGgggGCGGCGGCGGCGGCGccucaGGCc -3'
miRNA:   3'- -CACCa--UGCUGCUGCUGUCGCua---CUGc -5'
13937 5' -52.8 NC_003521.1 + 205288 0.74 0.798668
Target:  5'- -aGGccgacUACGGCGGCGugGGCGAgaaccUGGCGg -3'
miRNA:   3'- caCC-----AUGCUGCUGCugUCGCU-----ACUGC- -5'
13937 5' -52.8 NC_003521.1 + 180381 0.74 0.824371
Target:  5'- cUGG-ACGACGACGACGGCucccaGACGc -3'
miRNA:   3'- cACCaUGCUGCUGCUGUCGcua--CUGC- -5'
13937 5' -52.8 NC_003521.1 + 33153 0.69 0.973513
Target:  5'- -gGGcACGGCGGCagcaccGGCGGCGcgGGCGc -3'
miRNA:   3'- caCCaUGCUGCUG------CUGUCGCuaCUGC- -5'
13937 5' -52.8 NC_003521.1 + 131682 0.69 0.970796
Target:  5'- uUGGUGuugaaGGCGuuGACGGCGAUG-CGg -3'
miRNA:   3'- cACCAUg----CUGCugCUGUCGCUACuGC- -5'
13937 5' -52.8 NC_003521.1 + 233441 0.71 0.910405
Target:  5'- -cGGUAaCGGCGgccgccACGGCGGCGcgGACa -3'
miRNA:   3'- caCCAU-GCUGC------UGCUGUCGCuaCUGc -5'
13937 5' -52.8 NC_003521.1 + 52644 0.71 0.916183
Target:  5'- -aGGccGCGACGGCGGuCAG-GAUGACGc -3'
miRNA:   3'- caCCa-UGCUGCUGCU-GUCgCUACUGC- -5'
13937 5' -52.8 NC_003521.1 + 117446 0.71 0.937006
Target:  5'- ------gGGCGGCGGCAGCGAcGGCGg -3'
miRNA:   3'- caccaugCUGCUGCUGUCGCUaCUGC- -5'
13937 5' -52.8 NC_003521.1 + 76867 0.7 0.94164
Target:  5'- gGUGGUaGCGGCGGCugGACGGUGGaGGCu -3'
miRNA:   3'- -CACCA-UGCUGCUG--CUGUCGCUaCUGc -5'
13937 5' -52.8 NC_003521.1 + 203718 0.7 0.954189
Target:  5'- cUGGU-CGGCGACugcgguguucgaGGCGGCGggGGCGc -3'
miRNA:   3'- cACCAuGCUGCUG------------CUGUCGCuaCUGC- -5'
13937 5' -52.8 NC_003521.1 + 127232 0.7 0.957931
Target:  5'- -cGGc-CGGCGACGACGGCGcgGGu- -3'
miRNA:   3'- caCCauGCUGCUGCUGUCGCuaCUgc -5'
13937 5' -52.8 NC_003521.1 + 53635 0.69 0.961458
Target:  5'- cUGGUGCGcCG-CGuCAGCGG-GACGg -3'
miRNA:   3'- cACCAUGCuGCuGCuGUCGCUaCUGC- -5'
13937 5' -52.8 NC_003521.1 + 123764 0.69 0.964774
Target:  5'- -cGGcagcgGCGACGACGACaccccgccGGCGAcgGACa -3'
miRNA:   3'- caCCa----UGCUGCUGCUG--------UCGCUa-CUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.