miRNA display CGI


Results 121 - 140 of 246 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13937 5' -52.8 NC_003521.1 + 103547 0.7 0.94164
Target:  5'- gGUGGccUACGACGA-GACGGCGccGGCc -3'
miRNA:   3'- -CACC--AUGCUGCUgCUGUCGCuaCUGc -5'
13937 5' -52.8 NC_003521.1 + 11482 0.7 0.957931
Target:  5'- gGUGGUAUGuACGugGAC-GUGAggcgcGACGg -3'
miRNA:   3'- -CACCAUGC-UGCugCUGuCGCUa----CUGC- -5'
13937 5' -52.8 NC_003521.1 + 124408 0.7 0.957931
Target:  5'- -cGGcaGCGGCGGCGgaggcaGCGGCGcgGGCGg -3'
miRNA:   3'- caCCa-UGCUGCUGC------UGUCGCuaCUGC- -5'
13937 5' -52.8 NC_003521.1 + 53635 0.69 0.961458
Target:  5'- cUGGUGCGcCG-CGuCAGCGG-GACGg -3'
miRNA:   3'- cACCAUGCuGCuGCuGUCGCUaCUGC- -5'
13937 5' -52.8 NC_003521.1 + 123764 0.69 0.964774
Target:  5'- -cGGcagcgGCGACGACGACaccccgccGGCGAcgGACa -3'
miRNA:   3'- caCCa----UGCUGCUGCUG--------UCGCUa-CUGc -5'
13937 5' -52.8 NC_003521.1 + 78860 0.72 0.89817
Target:  5'- gGUGGUA--GCGcCGACGGCGcUGGCGg -3'
miRNA:   3'- -CACCAUgcUGCuGCUGUCGCuACUGC- -5'
13937 5' -52.8 NC_003521.1 + 133056 0.68 0.978389
Target:  5'- -cGGcgucaGGCGGCGGCGG-GAUGACGc -3'
miRNA:   3'- caCCaug--CUGCUGCUGUCgCUACUGC- -5'
13937 5' -52.8 NC_003521.1 + 54158 0.68 0.976042
Target:  5'- -cGGUgGCGGgGGCGGCGGCGA--ACGc -3'
miRNA:   3'- caCCA-UGCUgCUGCUGUCGCUacUGC- -5'
13937 5' -52.8 NC_003521.1 + 220928 0.69 0.970796
Target:  5'- --cGUGcCGA-GACGACGGCGAcGACGg -3'
miRNA:   3'- cacCAU-GCUgCUGCUGUCGCUaCUGC- -5'
13937 5' -52.8 NC_003521.1 + 58224 0.69 0.973513
Target:  5'- -aGG-ACGAUGAUGAUAGCGA-GAuCGa -3'
miRNA:   3'- caCCaUGCUGCUGCUGUCGCUaCU-GC- -5'
13937 5' -52.8 NC_003521.1 + 137252 0.75 0.780796
Target:  5'- -gGGgcCGACGGCGGCAGCGGgcagaGCGg -3'
miRNA:   3'- caCCauGCUGCUGCUGUCGCUac---UGC- -5'
13937 5' -52.8 NC_003521.1 + 212882 0.66 0.996362
Target:  5'- cGUGG-ACG-CgGGCGACGGgGGUGuCGg -3'
miRNA:   3'- -CACCaUGCuG-CUGCUGUCgCUACuGC- -5'
13937 5' -52.8 NC_003521.1 + 186807 0.68 0.982374
Target:  5'- -aGGcGCcACGGCGugGGCGAccagaucUGACGg -3'
miRNA:   3'- caCCaUGcUGCUGCugUCGCU-------ACUGC- -5'
13937 5' -52.8 NC_003521.1 + 116881 0.71 0.921733
Target:  5'- aGUGGcGCGGCuGCGGCGGCGcgccGGCGg -3'
miRNA:   3'- -CACCaUGCUGcUGCUGUCGCua--CUGC- -5'
13937 5' -52.8 NC_003521.1 + 118921 0.68 0.982567
Target:  5'- -cGGcGCcGCGGCGugGGCGgcGGCGu -3'
miRNA:   3'- caCCaUGcUGCUGCugUCGCuaCUGC- -5'
13937 5' -52.8 NC_003521.1 + 163905 0.71 0.916183
Target:  5'- -cGGUGCGuuacucggguGCGGCGGCAGCGGcaACGa -3'
miRNA:   3'- caCCAUGC----------UGCUGCUGUCGCUacUGC- -5'
13937 5' -52.8 NC_003521.1 + 145587 0.68 0.980562
Target:  5'- -cGGcACGACG-CGGCGGCcGUGGCc -3'
miRNA:   3'- caCCaUGCUGCuGCUGUCGcUACUGc -5'
13937 5' -52.8 NC_003521.1 + 74572 0.68 0.980562
Target:  5'- -aGGgcgGCGACGgaGCGGCGGCGc-GGCGu -3'
miRNA:   3'- caCCa--UGCUGC--UGCUGUCGCuaCUGC- -5'
13937 5' -52.8 NC_003521.1 + 52228 0.68 0.980562
Target:  5'- -cGGUAgGGCGGCGggcuacaguuggGCAGCGGcaGGCGg -3'
miRNA:   3'- caCCAUgCUGCUGC------------UGUCGCUa-CUGC- -5'
13937 5' -52.8 NC_003521.1 + 216291 0.71 0.910404
Target:  5'- cGUGGagcggACGACGuuGGCGGgGGUGAUGu -3'
miRNA:   3'- -CACCa----UGCUGCugCUGUCgCUACUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.