miRNA display CGI


Results 1 - 20 of 246 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13937 5' -52.8 NC_003521.1 + 129208 0.66 0.994346
Target:  5'- gGUGGUcuggcGCGugGugGGCAGUcc-GGCGc -3'
miRNA:   3'- -CACCA-----UGCugCugCUGUCGcuaCUGC- -5'
13937 5' -52.8 NC_003521.1 + 197233 0.66 0.993502
Target:  5'- gGUGGggaGACGAUaaaGACAGaGGUGAUGg -3'
miRNA:   3'- -CACCaugCUGCUG---CUGUCgCUACUGC- -5'
13937 5' -52.8 NC_003521.1 + 132425 0.66 0.996362
Target:  5'- --uGUGCGGCGACGccgcugguaGCGGUGGUGGg- -3'
miRNA:   3'- cacCAUGCUGCUGC---------UGUCGCUACUgc -5'
13937 5' -52.8 NC_003521.1 + 167705 0.66 0.993501
Target:  5'- cGUGGaggaGGCGGCGguaGCAGCGGUaGugGu -3'
miRNA:   3'- -CACCaug-CUGCUGC---UGUCGCUA-CugC- -5'
13937 5' -52.8 NC_003521.1 + 125519 0.66 0.994019
Target:  5'- cGUGGUGCuGAgGAuCGGCAGCGcuuccugcgucaGACGg -3'
miRNA:   3'- -CACCAUG-CUgCU-GCUGUCGCua----------CUGC- -5'
13937 5' -52.8 NC_003521.1 + 124089 0.66 0.993851
Target:  5'- -cGGgccCGACGGCGugGGCGGgaagcagcgcgucgcUGugGu -3'
miRNA:   3'- caCCau-GCUGCUGCugUCGCU---------------ACugC- -5'
13937 5' -52.8 NC_003521.1 + 99985 0.66 0.995769
Target:  5'- -aGGUugGGCGuguugaaGACGGCGAaGAUc -3'
miRNA:   3'- caCCAugCUGCug-----CUGUCGCUaCUGc -5'
13937 5' -52.8 NC_003521.1 + 156151 0.66 0.993501
Target:  5'- -cGG-ACGAuucCGACGACGGUGGcgaGGCGg -3'
miRNA:   3'- caCCaUGCU---GCUGCUGUCGCUa--CUGC- -5'
13937 5' -52.8 NC_003521.1 + 150696 0.66 0.994346
Target:  5'- -gGGUGCugcuGCGcCGGCGGCGAcUGGCu -3'
miRNA:   3'- caCCAUGc---UGCuGCUGUCGCU-ACUGc -5'
13937 5' -52.8 NC_003521.1 + 66367 0.66 0.996362
Target:  5'- cGUGGc-CGGCGGCGAgCAGCGAc---- -3'
miRNA:   3'- -CACCauGCUGCUGCU-GUCGCUacugc -5'
13937 5' -52.8 NC_003521.1 + 72538 0.66 0.993501
Target:  5'- -cGGagGCGGCGGCGACGGUGucguCGu -3'
miRNA:   3'- caCCa-UGCUGCUGCUGUCGCuacuGC- -5'
13937 5' -52.8 NC_003521.1 + 157217 0.66 0.996362
Target:  5'- cGUGGUGCGuuuguccuugaGCGcGCGACaaauguacggGGUGAUGGCc -3'
miRNA:   3'- -CACCAUGC-----------UGC-UGCUG----------UCGCUACUGc -5'
13937 5' -52.8 NC_003521.1 + 10553 0.66 0.995769
Target:  5'- aGUGGUGCuGACGuCGugGGUGucaguaaucGGCGg -3'
miRNA:   3'- -CACCAUG-CUGCuGCugUCGCua-------CUGC- -5'
13937 5' -52.8 NC_003521.1 + 124447 0.66 0.996362
Target:  5'- cGUGGUugGGCcGCGGCGGCac--GCGu -3'
miRNA:   3'- -CACCAugCUGcUGCUGUCGcuacUGC- -5'
13937 5' -52.8 NC_003521.1 + 95879 0.66 0.994346
Target:  5'- cUGGcUGCGugGAgaGACGGCGggGAa- -3'
miRNA:   3'- cACC-AUGCugCUg-CUGUCGCuaCUgc -5'
13937 5' -52.8 NC_003521.1 + 239676 0.66 0.995769
Target:  5'- cGUGGcuccCGGgGACGGCAGCGGUu-CGu -3'
miRNA:   3'- -CACCau--GCUgCUGCUGUCGCUAcuGC- -5'
13937 5' -52.8 NC_003521.1 + 40283 0.66 0.996362
Target:  5'- -aGGUugACGAaGACGAUGGguuCGAUGGCGu -3'
miRNA:   3'- caCCA--UGCUgCUGCUGUC---GCUACUGC- -5'
13937 5' -52.8 NC_003521.1 + 148422 0.66 0.996362
Target:  5'- aUGGUGCG--GGCGGCcGCGccGGCGg -3'
miRNA:   3'- cACCAUGCugCUGCUGuCGCuaCUGC- -5'
13937 5' -52.8 NC_003521.1 + 212882 0.66 0.996362
Target:  5'- cGUGG-ACG-CgGGCGACGGgGGUGuCGg -3'
miRNA:   3'- -CACCaUGCuG-CUGCUGUCgCUACuGC- -5'
13937 5' -52.8 NC_003521.1 + 179094 0.66 0.994955
Target:  5'- -cGGUgacaguaGCGACGACaGCAGCGuaggugcAUGACc -3'
miRNA:   3'- caCCA-------UGCUGCUGcUGUCGC-------UACUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.