miRNA display CGI


Results 1 - 20 of 246 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13937 5' -52.8 NC_003521.1 + 6286 1.1 0.009748
Target:  5'- aGUGGUACGACGACGACAGCGAUGACGa -3'
miRNA:   3'- -CACCAUGCUGCUGCUGUCGCUACUGC- -5'
13937 5' -52.8 NC_003521.1 + 35998 0.83 0.359242
Target:  5'- uUGGUcaGCGACGGCGACGGaGGUGGCGg -3'
miRNA:   3'- cACCA--UGCUGCUGCUGUCgCUACUGC- -5'
13937 5' -52.8 NC_003521.1 + 164734 0.83 0.383091
Target:  5'- -cGGcUGCGGCGGCGGCAGCGGcgaccgUGACGg -3'
miRNA:   3'- caCC-AUGCUGCUGCUGUCGCU------ACUGC- -5'
13937 5' -52.8 NC_003521.1 + 164874 0.81 0.442664
Target:  5'- gGUGGUAUGAgUGGCGGCGGCcGGUGGCGu -3'
miRNA:   3'- -CACCAUGCU-GCUGCUGUCG-CUACUGC- -5'
13937 5' -52.8 NC_003521.1 + 211888 0.81 0.460624
Target:  5'- -cGGUACGACGGCGGuguCAGCGAaGACa -3'
miRNA:   3'- caCCAUGCUGCUGCU---GUCGCUaCUGc -5'
13937 5' -52.8 NC_003521.1 + 30666 0.81 0.460624
Target:  5'- cGUGGU-CGGCGugGGCGGCGAcGGCa -3'
miRNA:   3'- -CACCAuGCUGCugCUGUCGCUaCUGc -5'
13937 5' -52.8 NC_003521.1 + 117536 0.8 0.488265
Target:  5'- -cGGcaccACGGcCGACGACGGCGGUGGCGg -3'
miRNA:   3'- caCCa---UGCU-GCUGCUGUCGCUACUGC- -5'
13937 5' -52.8 NC_003521.1 + 169213 0.8 0.488265
Target:  5'- -gGGaGCGACGGCGACAGCGgcGGCc -3'
miRNA:   3'- caCCaUGCUGCUGCUGUCGCuaCUGc -5'
13937 5' -52.8 NC_003521.1 + 92018 0.8 0.497652
Target:  5'- -aGGcGCGGCGGCGGCGGCGGUGGg- -3'
miRNA:   3'- caCCaUGCUGCUGCUGUCGCUACUgc -5'
13937 5' -52.8 NC_003521.1 + 72713 0.8 0.497653
Target:  5'- -aGGUagacgacagucGCGACGACGACGGCGAgGACu -3'
miRNA:   3'- caCCA-----------UGCUGCUGCUGUCGCUaCUGc -5'
13937 5' -52.8 NC_003521.1 + 41614 0.8 0.497653
Target:  5'- -aGGUGCGACGguggaugacGCGAUAGCGAUcGGCGg -3'
miRNA:   3'- caCCAUGCUGC---------UGCUGUCGCUA-CUGC- -5'
13937 5' -52.8 NC_003521.1 + 190297 0.8 0.516662
Target:  5'- cUGGU-CGAuCGGCGACGGUGAUGGCa -3'
miRNA:   3'- cACCAuGCU-GCUGCUGUCGCUACUGc -5'
13937 5' -52.8 NC_003521.1 + 74773 0.8 0.516662
Target:  5'- cGUGGcuggaguaugACGACGGCGGCAGCGGUaGCGg -3'
miRNA:   3'- -CACCa---------UGCUGCUGCUGUCGCUAcUGC- -5'
13937 5' -52.8 NC_003521.1 + 224035 0.8 0.516662
Target:  5'- -cGGUaACGGCGcCGACAGCGAgGACGa -3'
miRNA:   3'- caCCA-UGCUGCuGCUGUCGCUaCUGC- -5'
13937 5' -52.8 NC_003521.1 + 150556 0.8 0.526276
Target:  5'- gGUGGUGCGGguggUGGCGGCGGCGgcGGCGc -3'
miRNA:   3'- -CACCAUGCU----GCUGCUGUCGCuaCUGC- -5'
13937 5' -52.8 NC_003521.1 + 54469 0.79 0.575239
Target:  5'- -gGGcUACG-CGGCGGCGGUGGUGGCGg -3'
miRNA:   3'- caCC-AUGCuGCUGCUGUCGCUACUGC- -5'
13937 5' -52.8 NC_003521.1 + 18731 0.78 0.595136
Target:  5'- cUGGcgGCGGCGAucgUGGCGGCGGUGGCGc -3'
miRNA:   3'- cACCa-UGCUGCU---GCUGUCGCUACUGC- -5'
13937 5' -52.8 NC_003521.1 + 31002 0.78 0.615138
Target:  5'- aUGGgGCGACGACGGCgccGGCGAgGACGc -3'
miRNA:   3'- cACCaUGCUGCUGCUG---UCGCUaCUGC- -5'
13937 5' -52.8 NC_003521.1 + 116406 0.78 0.62516
Target:  5'- uUGGUugGGuaGCGGCGGCGAUGGCa -3'
miRNA:   3'- cACCAugCUgcUGCUGUCGCUACUGc -5'
13937 5' -52.8 NC_003521.1 + 141361 0.77 0.655229
Target:  5'- -gGGUGCGGCGGCGGuCGGUGAcgcggugcccgaUGACGa -3'
miRNA:   3'- caCCAUGCUGCUGCU-GUCGCU------------ACUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.