miRNA display CGI


Results 1 - 20 of 246 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13937 5' -52.8 NC_003521.1 + 351 0.69 0.967885
Target:  5'- -aGGgcaaACGAUGugGGCGGCGugcUGugGa -3'
miRNA:   3'- caCCa---UGCUGCugCUGUCGCu--ACugC- -5'
13937 5' -52.8 NC_003521.1 + 475 0.67 0.985779
Target:  5'- -cGGUuuccGCGGCGGCGuGCGGCGGgccggccggucgGACGu -3'
miRNA:   3'- caCCA----UGCUGCUGC-UGUCGCUa-----------CUGC- -5'
13937 5' -52.8 NC_003521.1 + 3910 0.69 0.961458
Target:  5'- -aGGca-GACGGCGGCGGCcGUGGCa -3'
miRNA:   3'- caCCaugCUGCUGCUGUCGcUACUGc -5'
13937 5' -52.8 NC_003521.1 + 4621 0.73 0.871066
Target:  5'- -cGGgccGCGAUGAgcgaaccgcCGGCGGCGGUGGCGc -3'
miRNA:   3'- caCCa--UGCUGCU---------GCUGUCGCUACUGC- -5'
13937 5' -52.8 NC_003521.1 + 5753 0.69 0.970796
Target:  5'- aUGGUcAUGACGAgaaagaUGACGG-GAUGACGg -3'
miRNA:   3'- cACCA-UGCUGCU------GCUGUCgCUACUGC- -5'
13937 5' -52.8 NC_003521.1 + 5854 0.73 0.84068
Target:  5'- gGUGGUgaaggaauacACGGCcgguGAUGACAGCGAcgGACGg -3'
miRNA:   3'- -CACCA----------UGCUG----CUGCUGUCGCUa-CUGC- -5'
13937 5' -52.8 NC_003521.1 + 6254 0.68 0.976042
Target:  5'- ----gACGACGGgGACGGCGAUaGCGu -3'
miRNA:   3'- caccaUGCUGCUgCUGUCGCUAcUGC- -5'
13937 5' -52.8 NC_003521.1 + 6286 1.1 0.009748
Target:  5'- aGUGGUACGACGACGACAGCGAUGACGa -3'
miRNA:   3'- -CACCAUGCUGCUGCUGUCGCUACUGC- -5'
13937 5' -52.8 NC_003521.1 + 7477 0.66 0.995099
Target:  5'- cGUGGa--GACGACGuacuuCAGCGugagGGCGu -3'
miRNA:   3'- -CACCaugCUGCUGCu----GUCGCua--CUGC- -5'
13937 5' -52.8 NC_003521.1 + 10553 0.66 0.995769
Target:  5'- aGUGGUGCuGACGuCGugGGUGucaguaaucGGCGg -3'
miRNA:   3'- -CACCAUG-CUGCuGCugUCGCua-------CUGC- -5'
13937 5' -52.8 NC_003521.1 + 11482 0.7 0.957931
Target:  5'- gGUGGUAUGuACGugGAC-GUGAggcgcGACGg -3'
miRNA:   3'- -CACCAUGC-UGCugCUGuCGCUa----CUGC- -5'
13937 5' -52.8 NC_003521.1 + 17364 0.76 0.714666
Target:  5'- -gGGUACGACGGCGGgucCGGUGGCGg -3'
miRNA:   3'- caCCAUGCUGCUGCUgucGCUACUGC- -5'
13937 5' -52.8 NC_003521.1 + 18084 0.72 0.891718
Target:  5'- cUGGa--GACGACGGCcGCGggGACGg -3'
miRNA:   3'- cACCaugCUGCUGCUGuCGCuaCUGC- -5'
13937 5' -52.8 NC_003521.1 + 18731 0.78 0.595136
Target:  5'- cUGGcgGCGGCGAucgUGGCGGCGGUGGCGc -3'
miRNA:   3'- cACCa-UGCUGCU---GCUGUCGCUACUGC- -5'
13937 5' -52.8 NC_003521.1 + 19058 0.67 0.991511
Target:  5'- -aGG-ACGGCGGCG-CGGCGcaGACGc -3'
miRNA:   3'- caCCaUGCUGCUGCuGUCGCuaCUGC- -5'
13937 5' -52.8 NC_003521.1 + 22834 0.66 0.993502
Target:  5'- -gGGUGCGACGcgucaggaacAUGACcGUGuUGACGg -3'
miRNA:   3'- caCCAUGCUGC----------UGCUGuCGCuACUGC- -5'
13937 5' -52.8 NC_003521.1 + 28246 0.72 0.898169
Target:  5'- -aGGaagaagACGGCGccgagaggaacaGCGGCGGCGAUGACa -3'
miRNA:   3'- caCCa-----UGCUGC------------UGCUGUCGCUACUGc -5'
13937 5' -52.8 NC_003521.1 + 28845 0.7 0.950229
Target:  5'- cUGG-ACGACGagcuGCGGCGGCGcgGcACGg -3'
miRNA:   3'- cACCaUGCUGC----UGCUGUCGCuaC-UGC- -5'
13937 5' -52.8 NC_003521.1 + 29400 0.68 0.976042
Target:  5'- -aGGacgACGACGAgGACAGUccgggccccGGUGACa -3'
miRNA:   3'- caCCa--UGCUGCUgCUGUCG---------CUACUGc -5'
13937 5' -52.8 NC_003521.1 + 30666 0.81 0.460624
Target:  5'- cGUGGU-CGGCGugGGCGGCGAcGGCa -3'
miRNA:   3'- -CACCAuGCUGCugCUGUCGCUaCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.