miRNA display CGI


Results 1 - 20 of 246 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13937 5' -52.8 NC_003521.1 + 30843 0.72 0.885047
Target:  5'- -cGG-GCGccuuGCGACGGCAGCGGuUGGCGu -3'
miRNA:   3'- caCCaUGC----UGCUGCUGUCGCU-ACUGC- -5'
13937 5' -52.8 NC_003521.1 + 218684 0.75 0.771664
Target:  5'- -cGGUAaGAgGGCGGCGGCGAaGGCGg -3'
miRNA:   3'- caCCAUgCUgCUGCUGUCGCUaCUGC- -5'
13937 5' -52.8 NC_003521.1 + 164675 0.75 0.779889
Target:  5'- cGUGGUGaaccccgUGACGACGAggcCGGCGGcUGACGa -3'
miRNA:   3'- -CACCAU-------GCUGCUGCU---GUCGCU-ACUGC- -5'
13937 5' -52.8 NC_003521.1 + 137252 0.75 0.780796
Target:  5'- -gGGgcCGACGGCGGCAGCGGgcagaGCGg -3'
miRNA:   3'- caCCauGCUGCUGCUGUCGCUac---UGC- -5'
13937 5' -52.8 NC_003521.1 + 73129 0.74 0.80739
Target:  5'- -aGGUgcugcACGGCGGgGGCAGCGgcGGCGg -3'
miRNA:   3'- caCCA-----UGCUGCUgCUGUCGCuaCUGC- -5'
13937 5' -52.8 NC_003521.1 + 146642 0.74 0.80739
Target:  5'- -aGGgccccgGCcACGACGACGGCGAggagGACGg -3'
miRNA:   3'- caCCa-----UGcUGCUGCUGUCGCUa---CUGC- -5'
13937 5' -52.8 NC_003521.1 + 162778 0.74 0.80739
Target:  5'- cGUGGUggACuGCGugGACGGCGAaGGCa -3'
miRNA:   3'- -CACCA--UGcUGCugCUGUCGCUaCUGc -5'
13937 5' -52.8 NC_003521.1 + 218710 0.73 0.856262
Target:  5'- -aGGagACGGCGGCGGCGGCG--GGCGa -3'
miRNA:   3'- caCCa-UGCUGCUGCUGUCGCuaCUGC- -5'
13937 5' -52.8 NC_003521.1 + 91913 0.72 0.878162
Target:  5'- -cGGauccAgGACGGCGGCGGCGAUG-CGg -3'
miRNA:   3'- caCCa---UgCUGCUGCUGUCGCUACuGC- -5'
13937 5' -52.8 NC_003521.1 + 134174 0.75 0.771664
Target:  5'- -aGGUgGCcAUGAUGACGGCGAUGAUGa -3'
miRNA:   3'- caCCA-UGcUGCUGCUGUCGCUACUGC- -5'
13937 5' -52.8 NC_003521.1 + 99312 0.76 0.734028
Target:  5'- gGUGGUGCGACuucGCGccCAGgGAUGACGg -3'
miRNA:   3'- -CACCAUGCUGc--UGCu-GUCgCUACUGC- -5'
13937 5' -52.8 NC_003521.1 + 131045 0.76 0.724385
Target:  5'- cUGG-GCGGCGGCGGCGggccucuggacGCGGUGGCGg -3'
miRNA:   3'- cACCaUGCUGCUGCUGU-----------CGCUACUGC- -5'
13937 5' -52.8 NC_003521.1 + 92018 0.8 0.497652
Target:  5'- -aGGcGCGGCGGCGGCGGCGGUGGg- -3'
miRNA:   3'- caCCaUGCUGCUGCUGUCGCUACUgc -5'
13937 5' -52.8 NC_003521.1 + 74773 0.8 0.516662
Target:  5'- cGUGGcuggaguaugACGACGGCGGCAGCGGUaGCGg -3'
miRNA:   3'- -CACCa---------UGCUGCUGCUGUCGCUAcUGC- -5'
13937 5' -52.8 NC_003521.1 + 150556 0.8 0.526276
Target:  5'- gGUGGUGCGGguggUGGCGGCGGCGgcGGCGc -3'
miRNA:   3'- -CACCAUGCU----GCUGCUGUCGCuaCUGC- -5'
13937 5' -52.8 NC_003521.1 + 18731 0.78 0.595136
Target:  5'- cUGGcgGCGGCGAucgUGGCGGCGGUGGCGc -3'
miRNA:   3'- cACCa-UGCUGCU---GCUGUCGCUACUGC- -5'
13937 5' -52.8 NC_003521.1 + 31002 0.78 0.615138
Target:  5'- aUGGgGCGACGACGGCgccGGCGAgGACGc -3'
miRNA:   3'- cACCaUGCUGCUGCUG---UCGCUaCUGC- -5'
13937 5' -52.8 NC_003521.1 + 116406 0.78 0.62516
Target:  5'- uUGGUugGGuaGCGGCGGCGAUGGCa -3'
miRNA:   3'- cACCAugCUgcUGCUGUCGCUACUGc -5'
13937 5' -52.8 NC_003521.1 + 141361 0.77 0.655229
Target:  5'- -gGGUGCGGCGGCGGuCGGUGAcgcggugcccgaUGACGa -3'
miRNA:   3'- caCCAUGCUGCUGCU-GUCGCU------------ACUGC- -5'
13937 5' -52.8 NC_003521.1 + 196725 0.77 0.675199
Target:  5'- -----cCGGCGGCGACGGUGGUGGCGg -3'
miRNA:   3'- caccauGCUGCUGCUGUCGCUACUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.