miRNA display CGI


Results 21 - 40 of 246 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13937 5' -52.8 NC_003521.1 + 190260 0.66 0.994346
Target:  5'- gGUGGUgggaGCGGUGACGGCGGCuuuuugagaaGGUGgACGg -3'
miRNA:   3'- -CACCA----UGCUGCUGCUGUCG----------CUAC-UGC- -5'
13937 5' -52.8 NC_003521.1 + 233510 0.66 0.994346
Target:  5'- -gGGUACGGUGACGAguGaCGuagcAUGACGc -3'
miRNA:   3'- caCCAUGCUGCUGCUguC-GC----UACUGC- -5'
13937 5' -52.8 NC_003521.1 + 150696 0.66 0.994346
Target:  5'- -gGGUGCugcuGCGcCGGCGGCGAcUGGCu -3'
miRNA:   3'- caCCAUGc---UGCuGCUGUCGCU-ACUGc -5'
13937 5' -52.8 NC_003521.1 + 129208 0.66 0.994346
Target:  5'- gGUGGUcuggcGCGugGugGGCAGUcc-GGCGc -3'
miRNA:   3'- -CACCA-----UGCugCugCUGUCGcuaCUGC- -5'
13937 5' -52.8 NC_003521.1 + 225245 0.66 0.994346
Target:  5'- cGUGGUGCugGugGGCGACcGCuacGAggaGACGg -3'
miRNA:   3'- -CACCAUG--CugCUGCUGuCG---CUa--CUGC- -5'
13937 5' -52.8 NC_003521.1 + 114786 0.66 0.994346
Target:  5'- aUGGUGCccgUGGCGGCGGUGGgcacGGCGg -3'
miRNA:   3'- cACCAUGcu-GCUGCUGUCGCUa---CUGC- -5'
13937 5' -52.8 NC_003521.1 + 95879 0.66 0.994346
Target:  5'- cUGGcUGCGugGAgaGACGGCGggGAa- -3'
miRNA:   3'- cACC-AUGCugCUg-CUGUCGCuaCUgc -5'
13937 5' -52.8 NC_003521.1 + 125519 0.66 0.994019
Target:  5'- cGUGGUGCuGAgGAuCGGCAGCGcuuccugcgucaGACGg -3'
miRNA:   3'- -CACCAUG-CUgCU-GCUGUCGCua----------CUGC- -5'
13937 5' -52.8 NC_003521.1 + 124089 0.66 0.993851
Target:  5'- -cGGgccCGACGGCGugGGCGGgaagcagcgcgucgcUGugGu -3'
miRNA:   3'- caCCau-GCUGCUGCugUCGCU---------------ACugC- -5'
13937 5' -52.8 NC_003521.1 + 197233 0.66 0.993502
Target:  5'- gGUGGggaGACGAUaaaGACAGaGGUGAUGg -3'
miRNA:   3'- -CACCaugCUGCUG---CUGUCgCUACUGC- -5'
13937 5' -52.8 NC_003521.1 + 58711 0.66 0.993502
Target:  5'- cGUGGUGCG-CGGaaaguucgccCGGCAGCGcUG-CGg -3'
miRNA:   3'- -CACCAUGCuGCU----------GCUGUCGCuACuGC- -5'
13937 5' -52.8 NC_003521.1 + 143837 0.66 0.993502
Target:  5'- -cGGUA-GACGcccgugccCGcCAGCGAUGGCGg -3'
miRNA:   3'- caCCAUgCUGCu-------GCuGUCGCUACUGC- -5'
13937 5' -52.8 NC_003521.1 + 22834 0.66 0.993502
Target:  5'- -gGGUGCGACGcgucaggaacAUGACcGUGuUGACGg -3'
miRNA:   3'- caCCAUGCUGC----------UGCUGuCGCuACUGC- -5'
13937 5' -52.8 NC_003521.1 + 72538 0.66 0.993501
Target:  5'- -cGGagGCGGCGGCGACGGUGucguCGu -3'
miRNA:   3'- caCCa-UGCUGCUGCUGUCGCuacuGC- -5'
13937 5' -52.8 NC_003521.1 + 167705 0.66 0.993501
Target:  5'- cGUGGaggaGGCGGCGguaGCAGCGGUaGugGu -3'
miRNA:   3'- -CACCaug-CUGCUGC---UGUCGCUA-CugC- -5'
13937 5' -52.8 NC_003521.1 + 156151 0.66 0.993501
Target:  5'- -cGG-ACGAuucCGACGACGGUGGcgaGGCGg -3'
miRNA:   3'- caCCaUGCU---GCUGCUGUCGCUa--CUGC- -5'
13937 5' -52.8 NC_003521.1 + 191051 0.67 0.992948
Target:  5'- cUGGccgACGcucaguucuguucccGCGGCGACcGUGGUGGCGg -3'
miRNA:   3'- cACCa--UGC---------------UGCUGCUGuCGCUACUGC- -5'
13937 5' -52.8 NC_003521.1 + 153113 0.67 0.992559
Target:  5'- -gGGcGCGcGCGACGGCAGCa--GGCGg -3'
miRNA:   3'- caCCaUGC-UGCUGCUGUCGcuaCUGC- -5'
13937 5' -52.8 NC_003521.1 + 103687 0.67 0.992559
Target:  5'- -aGGUGCuGAUGAaccaCGACGGUGAcGugGg -3'
miRNA:   3'- caCCAUG-CUGCU----GCUGUCGCUaCugC- -5'
13937 5' -52.8 NC_003521.1 + 118101 0.67 0.992559
Target:  5'- -cGG-ACGAgGACGACuGCGA-GGCc -3'
miRNA:   3'- caCCaUGCUgCUGCUGuCGCUaCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.