Results 41 - 50 of 50 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 13938 | 3' | -55.7 | NC_003521.1 | + | 4615 | 0.71 | 0.793038 |
|
Target: 5'- gCGAUGAGCGaaCCGccGGCGGCGGu- -3' miRNA: 3'- aGUUACUCGCgaGGCu-CCGCCGUUcu -5' |
|||||||
| 13938 | 3' | -55.7 | NC_003521.1 | + | 17168 | 0.7 | 0.835507 |
|
Target: 5'- aCGGUGAuuggagGCGCggCCGAGGgGGuCGAGGc -3' miRNA: 3'- aGUUACU------CGCGa-GGCUCCgCC-GUUCU- -5' |
|||||||
| 13938 | 3' | -55.7 | NC_003521.1 | + | 134892 | 0.69 | 0.851307 |
|
Target: 5'- ----cGAGaGCUCCGAGGUGGCc--- -3' miRNA: 3'- aguuaCUCgCGAGGCUCCGCCGuucu -5' |
|||||||
| 13938 | 3' | -55.7 | NC_003521.1 | + | 53847 | 0.68 | 0.893967 |
|
Target: 5'- -aAGUGA--GCUUCGAGGCGGCcccGGGAg -3' miRNA: 3'- agUUACUcgCGAGGCUCCGCCG---UUCU- -5' |
|||||||
| 13938 | 3' | -55.7 | NC_003521.1 | + | 54171 | 0.68 | 0.893967 |
|
Target: 5'- cCAAgggGGGCGCcgguggCgGGGGCGGCGGcGAa -3' miRNA: 3'- aGUUa--CUCGCGa-----GgCUCCGCCGUU-CU- -5' |
|||||||
| 13938 | 3' | -55.7 | NC_003521.1 | + | 66808 | 0.68 | 0.900334 |
|
Target: 5'- gUCGGUGaAGCGCgUCuUGAGGuCGGCGAu- -3' miRNA: 3'- -AGUUAC-UCGCG-AG-GCUCC-GCCGUUcu -5' |
|||||||
| 13938 | 3' | -55.7 | NC_003521.1 | + | 130416 | 0.68 | 0.906478 |
|
Target: 5'- cCAggGcguAGCGCUCgGuGGCGGCAGc- -3' miRNA: 3'- aGUuaC---UCGCGAGgCuCCGCCGUUcu -5' |
|||||||
| 13938 | 3' | -55.7 | NC_003521.1 | + | 202892 | 0.68 | 0.912397 |
|
Target: 5'- cCAGUGcuCGCggUCGAGGUcgGGCAGGAg -3' miRNA: 3'- aGUUACucGCGa-GGCUCCG--CCGUUCU- -5' |
|||||||
| 13938 | 3' | -55.7 | NC_003521.1 | + | 43235 | 0.68 | 0.914702 |
|
Target: 5'- gUCGGUGGGCGCcggcgggUCGcgcucgcugggcugcAGGCGGCAgcGGAu -3' miRNA: 3'- -AGUUACUCGCGa------GGC---------------UCCGCCGU--UCU- -5' |
|||||||
| 13938 | 3' | -55.7 | NC_003521.1 | + | 6687 | 0.97 | 0.026915 |
|
Target: 5'- gUCAAUGAGCGUcCCGAGGCGGCAAGAc -3' miRNA: 3'- -AGUUACUCGCGaGGCUCCGCCGUUCU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home