Results 41 - 50 of 50 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 13938 | 3' | -55.7 | NC_003521.1 | + | 117046 | 0.71 | 0.775023 |
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Target: 5'- cCAGUGuuuCGC-CCGAGGCGGCcgcGGAg -3' miRNA: 3'- aGUUACuc-GCGaGGCUCCGCCGu--UCU- -5' |
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| 13938 | 3' | -55.7 | NC_003521.1 | + | 114790 | 0.71 | 0.775023 |
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Target: 5'- aUCGAUG-GUGC-CCGuGGCGGCGguGGGc -3' miRNA: 3'- -AGUUACuCGCGaGGCuCCGCCGU--UCU- -5' |
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| 13938 | 3' | -55.7 | NC_003521.1 | + | 105026 | 0.71 | 0.747104 |
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Target: 5'- aCGG-GAGCGCUUCGAGGaCGGCc--- -3' miRNA: 3'- aGUUaCUCGCGAGGCUCC-GCCGuucu -5' |
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| 13938 | 3' | -55.7 | NC_003521.1 | + | 154303 | 0.71 | 0.747104 |
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Target: 5'- --uAUGGGCGC-CUGccGCGGCAAGAg -3' miRNA: 3'- aguUACUCGCGaGGCucCGCCGUUCU- -5' |
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| 13938 | 3' | -55.7 | NC_003521.1 | + | 52179 | 0.72 | 0.727995 |
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Target: 5'- aUCGAacGuGUGCcgCCGGGGCGGCGAGc -3' miRNA: 3'- -AGUUa-CuCGCGa-GGCUCCGCCGUUCu -5' |
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| 13938 | 3' | -55.7 | NC_003521.1 | + | 135390 | 0.72 | 0.718317 |
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Target: 5'- ----cGGGCGCcaaaccgugCCGAGGCGgGCGGGAa -3' miRNA: 3'- aguuaCUCGCGa--------GGCUCCGC-CGUUCU- -5' |
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| 13938 | 3' | -55.7 | NC_003521.1 | + | 102338 | 0.72 | 0.708569 |
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Target: 5'- --cGUGGGCGCcgacgCCGGGGUGGCGgcAGGc -3' miRNA: 3'- aguUACUCGCGa----GGCUCCGCCGU--UCU- -5' |
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| 13938 | 3' | -55.7 | NC_003521.1 | + | 191671 | 0.74 | 0.629047 |
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Target: 5'- gCGAUGAG-GUcgCCGAGGaCGGCGAGGc -3' miRNA: 3'- aGUUACUCgCGa-GGCUCC-GCCGUUCU- -5' |
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| 13938 | 3' | -55.7 | NC_003521.1 | + | 114375 | 0.78 | 0.394769 |
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Target: 5'- cCGGUGAGCagaUCCGAGGCGGCGcGGu -3' miRNA: 3'- aGUUACUCGcg-AGGCUCCGCCGUuCU- -5' |
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| 13938 | 3' | -55.7 | NC_003521.1 | + | 6687 | 0.97 | 0.026915 |
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Target: 5'- gUCAAUGAGCGUcCCGAGGCGGCAAGAc -3' miRNA: 3'- -AGUUACUCGCGaGGCUCCGCCGUUCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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