miRNA display CGI


Results 61 - 80 of 269 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13938 5' -64.4 NC_003521.1 + 85657 0.66 0.645896
Target:  5'- aGCCGCGGccgccAGCUGUuccgagccGGCGUCCagcacgcgCCg -3'
miRNA:   3'- gCGGCGCCa----UCGACG--------CCGCGGGga------GG- -5'
13938 5' -64.4 NC_003521.1 + 136714 0.66 0.645896
Target:  5'- aCGCCGCcgaGGaUGGCaGC-GCGCCgCCUuCCg -3'
miRNA:   3'- -GCGGCG---CC-AUCGaCGcCGCGG-GGA-GG- -5'
13938 5' -64.4 NC_003521.1 + 201008 0.66 0.645896
Target:  5'- gCGCCaucgGCGGaGGaccgccCGGCGCCCCgCCg -3'
miRNA:   3'- -GCGG----CGCCaUCgac---GCCGCGGGGaGG- -5'
13938 5' -64.4 NC_003521.1 + 215444 0.66 0.655249
Target:  5'- aGCCGCGGg---UGCuGGCGCCaggCCg -3'
miRNA:   3'- gCGGCGCCaucgACG-CCGCGGggaGG- -5'
13938 5' -64.4 NC_003521.1 + 115659 0.67 0.617809
Target:  5'- gGCCGUGGcGGCcGCccGCGCCCUgcacaugCCg -3'
miRNA:   3'- gCGGCGCCaUCGaCGc-CGCGGGGa------GG- -5'
13938 5' -64.4 NC_003521.1 + 129971 0.67 0.608458
Target:  5'- gGCCGCGGccGGCagaaGCgGGCGUCCUcgCCc -3'
miRNA:   3'- gCGGCGCCa-UCGa---CG-CCGCGGGGa-GG- -5'
13938 5' -64.4 NC_003521.1 + 140185 0.67 0.608458
Target:  5'- gGCCGUGccccgAGgaGCaGCGCgCCUCCu -3'
miRNA:   3'- gCGGCGCca---UCgaCGcCGCGgGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 100529 0.67 0.627171
Target:  5'- uGCUGCGGcGGCgGCGGCgacaGCUCgUCg -3'
miRNA:   3'- gCGGCGCCaUCGaCGCCG----CGGGgAGg -5'
13938 5' -64.4 NC_003521.1 + 101301 0.67 0.617809
Target:  5'- gGCCGCcauGG-AGCUGCacgGGCGUgCCCgCCa -3'
miRNA:   3'- gCGGCG---CCaUCGACG---CCGCG-GGGaGG- -5'
13938 5' -64.4 NC_003521.1 + 238938 0.67 0.596323
Target:  5'- cCGUCcCGGUaccugcgccAGCUGCGGUauuagaggcgccggGCCCCgUCCc -3'
miRNA:   3'- -GCGGcGCCA---------UCGACGCCG--------------CGGGG-AGG- -5'
13938 5' -64.4 NC_003521.1 + 104130 0.67 0.598187
Target:  5'- uCGCCGUGGggacacgauggAGCUGgccCGGCGCCUguguggcuucuugCUCUg -3'
miRNA:   3'- -GCGGCGCCa----------UCGAC---GCCGCGGG-------------GAGG- -5'
13938 5' -64.4 NC_003521.1 + 70028 0.67 0.617809
Target:  5'- uCGCCGUGGUAuGCcgucagUGCGGCcauuGCCUCaaUCUg -3'
miRNA:   3'- -GCGGCGCCAU-CG------ACGCCG----CGGGG--AGG- -5'
13938 5' -64.4 NC_003521.1 + 134229 0.67 0.59912
Target:  5'- gGCCGa-GUAGCUGCccGCGCcgCCCUCg -3'
miRNA:   3'- gCGGCgcCAUCGACGc-CGCG--GGGAGg -5'
13938 5' -64.4 NC_003521.1 + 128132 0.67 0.618745
Target:  5'- aCGCCGCgcauccugguGGgcaaccugcccgacgGGCUGgcgcCGGgGCCCUUCCa -3'
miRNA:   3'- -GCGGCG----------CCa--------------UCGAC----GCCgCGGGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 197638 0.67 0.627171
Target:  5'- gGCCGCGaacguGUUGCGGCacGUCCCagucUCCu -3'
miRNA:   3'- gCGGCGCcau--CGACGCCG--CGGGG----AGG- -5'
13938 5' -64.4 NC_003521.1 + 129995 0.67 0.627171
Target:  5'- cCGCUGCGccGGCgGCGGCGCgCaacggCCg -3'
miRNA:   3'- -GCGGCGCcaUCGaCGCCGCGgGga---GG- -5'
13938 5' -64.4 NC_003521.1 + 127219 0.67 0.627171
Target:  5'- uCGUCGuCGcUGGC-GCGGUGgUCCUCCa -3'
miRNA:   3'- -GCGGC-GCcAUCGaCGCCGCgGGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 70700 0.67 0.627171
Target:  5'- gCGCCGCa--AGCUGCgucGGCGCCUgcgCCg -3'
miRNA:   3'- -GCGGCGccaUCGACG---CCGCGGGga-GG- -5'
13938 5' -64.4 NC_003521.1 + 40804 0.67 0.608458
Target:  5'- cCGgCGCGGUcAGCUauucgccucgggGCGGgGCCCgCgCCa -3'
miRNA:   3'- -GCgGCGCCA-UCGA------------CGCCgCGGG-GaGG- -5'
13938 5' -64.4 NC_003521.1 + 211833 0.67 0.627171
Target:  5'- cCGCCGCG--AGCgUGCGGCGCUaCUg- -3'
miRNA:   3'- -GCGGCGCcaUCG-ACGCCGCGGgGAgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.