Results 101 - 120 of 269 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
13938 | 5' | -64.4 | NC_003521.1 | + | 202377 | 0.67 | 0.596323 |
Target: 5'- cCGUCcCGGUaccugcgccAGCUGCGGUauuagaggcgccggGCCCCgUCCc -3' miRNA: 3'- -GCGGcGCCA---------UCGACGCCG--------------CGGGG-AGG- -5' |
|||||||
13938 | 5' | -64.4 | NC_003521.1 | + | 128132 | 0.67 | 0.618745 |
Target: 5'- aCGCCGCgcauccugguGGgcaaccugcccgacgGGCUGgcgcCGGgGCCCUUCCa -3' miRNA: 3'- -GCGGCG----------CCa--------------UCGAC----GCCgCGGGGAGG- -5' |
|||||||
13938 | 5' | -64.4 | NC_003521.1 | + | 80760 | 0.67 | 0.589803 |
Target: 5'- aGCCGUGGgcGGC-GCGGUGgC-CUCCg -3' miRNA: 3'- gCGGCGCCa-UCGaCGCCGCgGgGAGG- -5' |
|||||||
13938 | 5' | -64.4 | NC_003521.1 | + | 211833 | 0.67 | 0.627171 |
Target: 5'- cCGCCGCG--AGCgUGCGGCGCUaCUg- -3' miRNA: 3'- -GCGGCGCcaUCG-ACGCCGCGGgGAgg -5' |
|||||||
13938 | 5' | -64.4 | NC_003521.1 | + | 168794 | 0.68 | 0.525586 |
Target: 5'- cCGCCGCGcUGGCcgccagccUGCuGGCGUcgccgUCCUCCg -3' miRNA: 3'- -GCGGCGCcAUCG--------ACG-CCGCG-----GGGAGG- -5' |
|||||||
13938 | 5' | -64.4 | NC_003521.1 | + | 238991 | 0.68 | 0.525586 |
Target: 5'- uGCUGCuGGaacuGCUGcCGGUGCUaCCUCCu -3' miRNA: 3'- gCGGCG-CCau--CGAC-GCCGCGG-GGAGG- -5' |
|||||||
13938 | 5' | -64.4 | NC_003521.1 | + | 101141 | 0.68 | 0.571252 |
Target: 5'- gGCaCGCGGaaAGC-GCGGCGCggucugcguCCCUCUc -3' miRNA: 3'- gCG-GCGCCa-UCGaCGCCGCG---------GGGAGG- -5' |
|||||||
13938 | 5' | -64.4 | NC_003521.1 | + | 150041 | 0.68 | 0.543707 |
Target: 5'- aCGCCGUGGcguugaGGCguaccgcGCGGcCGCCCUcgCCg -3' miRNA: 3'- -GCGGCGCCa-----UCGa------CGCC-GCGGGGa-GG- -5' |
|||||||
13938 | 5' | -64.4 | NC_003521.1 | + | 35028 | 0.68 | 0.51393 |
Target: 5'- gGCggaCGCGGUugGGCacgcucaugccgUGCGGCGCCaccacacaggucuuCCUCCg -3' miRNA: 3'- gCG---GCGCCA--UCG------------ACGCCGCGG--------------GGAGG- -5' |
|||||||
13938 | 5' | -64.4 | NC_003521.1 | + | 209209 | 0.68 | 0.571252 |
Target: 5'- gGCCGCGGUGGCccUGCcaGCugaCCCUgCCg -3' miRNA: 3'- gCGGCGCCAUCG--ACGc-CGcg-GGGA-GG- -5' |
|||||||
13938 | 5' | -64.4 | NC_003521.1 | + | 135018 | 0.68 | 0.571252 |
Target: 5'- uCGCCcuucuCGGUgaAGCUGUgcaGGUGCUCCUCg -3' miRNA: 3'- -GCGGc----GCCA--UCGACG---CCGCGGGGAGg -5' |
|||||||
13938 | 5' | -64.4 | NC_003521.1 | + | 140223 | 0.68 | 0.571252 |
Target: 5'- uCGCCGUGc-AGCaugaugGCGGC-UCCCUCCg -3' miRNA: 3'- -GCGGCGCcaUCGa-----CGCCGcGGGGAGG- -5' |
|||||||
13938 | 5' | -64.4 | NC_003521.1 | + | 204084 | 0.68 | 0.571252 |
Target: 5'- aCGUCGUGGgccacguGCaccugGUGGCGCCacugcgCCUCCa -3' miRNA: 3'- -GCGGCGCCau-----CGa----CGCCGCGG------GGAGG- -5' |
|||||||
13938 | 5' | -64.4 | NC_003521.1 | + | 32147 | 0.68 | 0.525586 |
Target: 5'- uGCCGCGGccUGGCggUGCGGUaCCgCUCg -3' miRNA: 3'- gCGGCGCC--AUCG--ACGCCGcGGgGAGg -5' |
|||||||
13938 | 5' | -64.4 | NC_003521.1 | + | 132434 | 0.68 | 0.51661 |
Target: 5'- aCGCCGCuGGUAGCgGUGGUgggcuguucgGCgCgUCCg -3' miRNA: 3'- -GCGGCG-CCAUCGaCGCCG----------CGgGgAGG- -5' |
|||||||
13938 | 5' | -64.4 | NC_003521.1 | + | 4598 | 0.68 | 0.571252 |
Target: 5'- gGCgGCGGUGGCgccaggcaugGaCGGUcgaGCCCCcgCCg -3' miRNA: 3'- gCGgCGCCAUCGa---------C-GCCG---CGGGGa-GG- -5' |
|||||||
13938 | 5' | -64.4 | NC_003521.1 | + | 63320 | 0.68 | 0.571252 |
Target: 5'- gGUCGCGGUcgucgccagGGCcGaCGGgGCCUgUCCg -3' miRNA: 3'- gCGGCGCCA---------UCGaC-GCCgCGGGgAGG- -5' |
|||||||
13938 | 5' | -64.4 | NC_003521.1 | + | 202325 | 0.68 | 0.525586 |
Target: 5'- uGCUGCuGGaacuGCUGcCGGUGCUaCCUCCu -3' miRNA: 3'- gCGGCG-CCau--CGAC-GCCGCGG-GGAGG- -5' |
|||||||
13938 | 5' | -64.4 | NC_003521.1 | + | 92086 | 0.68 | 0.525586 |
Target: 5'- gGUCGgGGgguGCgcaggGCGGUGCCCCgggUCg -3' miRNA: 3'- gCGGCgCCau-CGa----CGCCGCGGGGa--GG- -5' |
|||||||
13938 | 5' | -64.4 | NC_003521.1 | + | 114958 | 0.68 | 0.51661 |
Target: 5'- aGCgGCGGcuGCUGCGGCGUCagucgCCu -3' miRNA: 3'- gCGgCGCCauCGACGCCGCGGgga--GG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home