miRNA display CGI


Results 121 - 140 of 269 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13938 5' -64.4 NC_003521.1 + 124677 0.68 0.568481
Target:  5'- gCGUCGCGGUaggugauggucuuuAGCUGgugcaCGGcCGCCuuuaCCUCCu -3'
miRNA:   3'- -GCGGCGCCA--------------UCGAC-----GCC-GCGG----GGAGG- -5'
13938 5' -64.4 NC_003521.1 + 204084 0.68 0.571252
Target:  5'- aCGUCGUGGgccacguGCaccugGUGGCGCCacugcgCCUCCa -3'
miRNA:   3'- -GCGGCGCCau-----CGa----CGCCGCGG------GGAGG- -5'
13938 5' -64.4 NC_003521.1 + 140223 0.68 0.571252
Target:  5'- uCGCCGUGc-AGCaugaugGCGGC-UCCCUCCg -3'
miRNA:   3'- -GCGGCGCcaUCGa-----CGCCGcGGGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 135018 0.68 0.571252
Target:  5'- uCGCCcuucuCGGUgaAGCUGUgcaGGUGCUCCUCg -3'
miRNA:   3'- -GCGGc----GCCA--UCGACG---CCGCGGGGAGg -5'
13938 5' -64.4 NC_003521.1 + 209209 0.68 0.571252
Target:  5'- gGCCGCGGUGGCccUGCcaGCugaCCCUgCCg -3'
miRNA:   3'- gCGGCGCCAUCG--ACGc-CGcg-GGGA-GG- -5'
13938 5' -64.4 NC_003521.1 + 101141 0.68 0.571252
Target:  5'- gGCaCGCGGaaAGC-GCGGCGCggucugcguCCCUCUc -3'
miRNA:   3'- gCG-GCGCCa-UCGaCGCCGCG---------GGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 59594 0.68 0.571252
Target:  5'- gCGCCaagaaggaCGGUAGUgGCGGCGgCCCCg-- -3'
miRNA:   3'- -GCGGc-------GCCAUCGaCGCCGC-GGGGagg -5'
13938 5' -64.4 NC_003521.1 + 117284 0.68 0.562028
Target:  5'- gGCCGUGGU-GC--CGGCuCCCCUCa -3'
miRNA:   3'- gCGGCGCCAuCGacGCCGcGGGGAGg -5'
13938 5' -64.4 NC_003521.1 + 32888 0.68 0.562028
Target:  5'- gCGCCGcCGGU-GCUGCcgccGUGCCCg-CCg -3'
miRNA:   3'- -GCGGC-GCCAuCGACGc---CGCGGGgaGG- -5'
13938 5' -64.4 NC_003521.1 + 85476 0.68 0.552845
Target:  5'- uCGUCGUGGUGccGgUGCccGCGCCCCcgCCg -3'
miRNA:   3'- -GCGGCGCCAU--CgACGc-CGCGGGGa-GG- -5'
13938 5' -64.4 NC_003521.1 + 201863 0.68 0.570328
Target:  5'- gGCUcggggacaGCGGUGGCccGCGGCgcguucaGCCCCagCCg -3'
miRNA:   3'- gCGG--------CGCCAUCGa-CGCCG-------CGGGGa-GG- -5'
13938 5' -64.4 NC_003521.1 + 168794 0.68 0.525586
Target:  5'- cCGCCGCGcUGGCcgccagccUGCuGGCGUcgccgUCCUCCg -3'
miRNA:   3'- -GCGGCGCcAUCG--------ACG-CCGCG-----GGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 35028 0.68 0.51393
Target:  5'- gGCggaCGCGGUugGGCacgcucaugccgUGCGGCGCCaccacacaggucuuCCUCCg -3'
miRNA:   3'- gCG---GCGCCA--UCG------------ACGCCGCGG--------------GGAGG- -5'
13938 5' -64.4 NC_003521.1 + 114958 0.68 0.51661
Target:  5'- aGCgGCGGcuGCUGCGGCGUCagucgCCu -3'
miRNA:   3'- gCGgCGCCauCGACGCCGCGGgga--GG- -5'
13938 5' -64.4 NC_003521.1 + 132434 0.68 0.51661
Target:  5'- aCGCCGCuGGUAGCgGUGGUgggcuguucgGCgCgUCCg -3'
miRNA:   3'- -GCGGCG-CCAUCGaCGCCG----------CGgGgAGG- -5'
13938 5' -64.4 NC_003521.1 + 92086 0.68 0.525586
Target:  5'- gGUCGgGGgguGCgcaggGCGGUGCCCCgggUCg -3'
miRNA:   3'- gCGGCgCCau-CGa----CGCCGCGGGGa--GG- -5'
13938 5' -64.4 NC_003521.1 + 202325 0.68 0.525586
Target:  5'- uGCUGCuGGaacuGCUGcCGGUGCUaCCUCCu -3'
miRNA:   3'- gCGGCG-CCau--CGAC-GCCGCGG-GGAGG- -5'
13938 5' -64.4 NC_003521.1 + 232217 0.68 0.534619
Target:  5'- gGUgGUGGUGGCugUGCGGCGUCUgUUg -3'
miRNA:   3'- gCGgCGCCAUCG--ACGCCGCGGGgAGg -5'
13938 5' -64.4 NC_003521.1 + 196438 0.68 0.543707
Target:  5'- uCGCC-CGGgucggccGGCUGCcGCGCgaaCCUCCg -3'
miRNA:   3'- -GCGGcGCCa------UCGACGcCGCGg--GGAGG- -5'
13938 5' -64.4 NC_003521.1 + 226908 0.68 0.552845
Target:  5'- gGCCaGCGc-GGCcuccGCGGC-CCCCUCCg -3'
miRNA:   3'- gCGG-CGCcaUCGa---CGCCGcGGGGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.