miRNA display CGI


Results 141 - 160 of 269 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13938 5' -64.4 NC_003521.1 + 204084 0.68 0.571252
Target:  5'- aCGUCGUGGgccacguGCaccugGUGGCGCCacugcgCCUCCa -3'
miRNA:   3'- -GCGGCGCCau-----CGa----CGCCGCGG------GGAGG- -5'
13938 5' -64.4 NC_003521.1 + 124023 0.68 0.534619
Target:  5'- uGCCGCGGUgcgucagcGGCUGCuuGGCguuguGCUUgUCCg -3'
miRNA:   3'- gCGGCGCCA--------UCGACG--CCG-----CGGGgAGG- -5'
13938 5' -64.4 NC_003521.1 + 88242 0.68 0.534619
Target:  5'- aGCCGaaGUAGCgcuugUGCGGCGCCagCUUg -3'
miRNA:   3'- gCGGCgcCAUCG-----ACGCCGCGGg-GAGg -5'
13938 5' -64.4 NC_003521.1 + 201863 0.68 0.570328
Target:  5'- gGCUcggggacaGCGGUGGCccGCGGCgcguucaGCCCCagCCg -3'
miRNA:   3'- gCGG--------CGCCAUCGa-CGCCG-------CGGGGa-GG- -5'
13938 5' -64.4 NC_003521.1 + 140223 0.68 0.571252
Target:  5'- uCGCCGUGc-AGCaugaugGCGGC-UCCCUCCg -3'
miRNA:   3'- -GCGGCGCcaUCGa-----CGCCGcGGGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 35028 0.68 0.51393
Target:  5'- gGCggaCGCGGUugGGCacgcucaugccgUGCGGCGCCaccacacaggucuuCCUCCg -3'
miRNA:   3'- gCG---GCGCCA--UCG------------ACGCCGCGG--------------GGAGG- -5'
13938 5' -64.4 NC_003521.1 + 114958 0.68 0.51661
Target:  5'- aGCgGCGGcuGCUGCGGCGUCagucgCCu -3'
miRNA:   3'- gCGgCGCCauCGACGCCGCGGgga--GG- -5'
13938 5' -64.4 NC_003521.1 + 92086 0.68 0.525586
Target:  5'- gGUCGgGGgguGCgcaggGCGGUGCCCCgggUCg -3'
miRNA:   3'- gCGGCgCCau-CGa----CGCCGCGGGGa--GG- -5'
13938 5' -64.4 NC_003521.1 + 202325 0.68 0.525586
Target:  5'- uGCUGCuGGaacuGCUGcCGGUGCUaCCUCCu -3'
miRNA:   3'- gCGGCG-CCau--CGAC-GCCGCGG-GGAGG- -5'
13938 5' -64.4 NC_003521.1 + 232804 0.68 0.525586
Target:  5'- aCGCCuccgGCGGUcuggAGCUaCGGCGCUgccccgguaCCUCCc -3'
miRNA:   3'- -GCGG----CGCCA----UCGAcGCCGCGG---------GGAGG- -5'
13938 5' -64.4 NC_003521.1 + 162594 0.68 0.52829
Target:  5'- gGCUGCGGUGGCacucgcucgacagccUccgacgaGCGccGCGCCCgCUCCg -3'
miRNA:   3'- gCGGCGCCAUCG---------------A-------CGC--CGCGGG-GAGG- -5'
13938 5' -64.4 NC_003521.1 + 128638 0.68 0.533713
Target:  5'- uGCCGUaGGUGGC--CGGCGCCgacaccgUCUCCu -3'
miRNA:   3'- gCGGCG-CCAUCGacGCCGCGG-------GGAGG- -5'
13938 5' -64.4 NC_003521.1 + 77939 0.68 0.534619
Target:  5'- gGCaguaGCGGcccacCUGCGcGCGCCCCUgCg -3'
miRNA:   3'- gCGg---CGCCauc--GACGC-CGCGGGGAgG- -5'
13938 5' -64.4 NC_003521.1 + 117375 0.69 0.472737
Target:  5'- -cCCGCGGUccccGCUaCGGCGCCuCCgUCCu -3'
miRNA:   3'- gcGGCGCCAu---CGAcGCCGCGG-GG-AGG- -5'
13938 5' -64.4 NC_003521.1 + 164007 0.69 0.490072
Target:  5'- gCGCCGCuGUuGCcGcCGGCGCCgCUCa -3'
miRNA:   3'- -GCGGCGcCAuCGaC-GCCGCGGgGAGg -5'
13938 5' -64.4 NC_003521.1 + 71399 0.69 0.481367
Target:  5'- uCGuCCGCGuG-AGCgagGCGGCGgCCCCgaaCCu -3'
miRNA:   3'- -GC-GGCGC-CaUCGa--CGCCGC-GGGGa--GG- -5'
13938 5' -64.4 NC_003521.1 + 127010 0.69 0.481367
Target:  5'- aCGUgGCGGUGcccgacgacgccGCcGCGGUGCCCgUCg -3'
miRNA:   3'- -GCGgCGCCAU------------CGaCGCCGCGGGgAGg -5'
13938 5' -64.4 NC_003521.1 + 74184 0.69 0.490072
Target:  5'- gCGCCGCGGc-GCccgGCGcGCGgCCCgacgCCg -3'
miRNA:   3'- -GCGGCGCCauCGa--CGC-CGCgGGGa---GG- -5'
13938 5' -64.4 NC_003521.1 + 216673 0.69 0.496209
Target:  5'- -uCCGCGGUGGUcGCGGCgacGUuauaggcacgaacgCCCUCCg -3'
miRNA:   3'- gcGGCGCCAUCGaCGCCG---CG--------------GGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 223367 0.69 0.49885
Target:  5'- gGCCuuGGUcagcAGCgacaucGCGGCGCCCCgacgcgggCCg -3'
miRNA:   3'- gCGGcgCCA----UCGa-----CGCCGCGGGGa-------GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.