miRNA display CGI


Results 81 - 100 of 269 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13938 5' -64.4 NC_003521.1 + 137298 0.69 0.507698
Target:  5'- aGCUGCgGGUGGCgcggcugcugcGCGGCGaCCCCg-- -3'
miRNA:   3'- gCGGCG-CCAUCGa----------CGCCGC-GGGGagg -5'
13938 5' -64.4 NC_003521.1 + 164426 0.69 0.464186
Target:  5'- cCGCCGCuGGU-GCUaGCaGCGCCaCCgcggCCg -3'
miRNA:   3'- -GCGGCG-CCAuCGA-CGcCGCGG-GGa---GG- -5'
13938 5' -64.4 NC_003521.1 + 127010 0.69 0.481367
Target:  5'- aCGUgGCGGUGcccgacgacgccGCcGCGGUGCCCgUCg -3'
miRNA:   3'- -GCGgCGCCAU------------CGaCGCCGCGGGgAGg -5'
13938 5' -64.4 NC_003521.1 + 192723 0.69 0.464186
Target:  5'- cCGCgauaGCGGUGGUuuuuucuuuuucUGCGGCGUCCgCgggCCg -3'
miRNA:   3'- -GCGg---CGCCAUCG------------ACGCCGCGGG-Ga--GG- -5'
13938 5' -64.4 NC_003521.1 + 162215 0.69 0.464186
Target:  5'- aGCCGCGc-AGU--CGGUGCCUCUCCg -3'
miRNA:   3'- gCGGCGCcaUCGacGCCGCGGGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 114312 0.69 0.464186
Target:  5'- aCGCCGCGGaccugGGCuucUGCcgccuGGCGCUCUUCg -3'
miRNA:   3'- -GCGGCGCCa----UCG---ACG-----CCGCGGGGAGg -5'
13938 5' -64.4 NC_003521.1 + 82923 0.69 0.461637
Target:  5'- uGCC-UGGUAgucugcguuagcuuGCUGCGGaCGCCcuCCUCCg -3'
miRNA:   3'- gCGGcGCCAU--------------CGACGCC-GCGG--GGAGG- -5'
13938 5' -64.4 NC_003521.1 + 36061 0.69 0.464186
Target:  5'- cCGCCGCcgacacaacagGGcGGCgGCGGCGCCUCcaucaCCa -3'
miRNA:   3'- -GCGGCG-----------CCaUCGaCGCCGCGGGGa----GG- -5'
13938 5' -64.4 NC_003521.1 + 137842 0.69 0.472737
Target:  5'- aCGCCGCG---GCUG-GGcCGCCCCgCCa -3'
miRNA:   3'- -GCGGCGCcauCGACgCC-GCGGGGaGG- -5'
13938 5' -64.4 NC_003521.1 + 204369 0.69 0.467597
Target:  5'- uCGUCGCGGcccAGgaGCGaGCGCaacucgucuccgcggCCCUCCg -3'
miRNA:   3'- -GCGGCGCCa--UCgaCGC-CGCG---------------GGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 223367 0.69 0.49885
Target:  5'- gGCCuuGGUcagcAGCgacaucGCGGCGCCCCgacgcgggCCg -3'
miRNA:   3'- gCGGcgCCA----UCGa-----CGCCGCGGGGa-------GG- -5'
13938 5' -64.4 NC_003521.1 + 216673 0.69 0.496209
Target:  5'- -uCCGCGGUGGUcGCGGCgacGUuauaggcacgaacgCCCUCCg -3'
miRNA:   3'- gcGGCGCCAUCGaCGCCG---CG--------------GGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 74184 0.69 0.490072
Target:  5'- gCGCCGCGGc-GCccgGCGcGCGgCCCgacgCCg -3'
miRNA:   3'- -GCGGCGCCauCGa--CGC-CGCgGGGa---GG- -5'
13938 5' -64.4 NC_003521.1 + 71399 0.69 0.481367
Target:  5'- uCGuCCGCGuG-AGCgagGCGGCGgCCCCgaaCCu -3'
miRNA:   3'- -GC-GGCGC-CaUCGa--CGCCGC-GGGGa--GG- -5'
13938 5' -64.4 NC_003521.1 + 117375 0.69 0.472737
Target:  5'- -cCCGCGGUccccGCUaCGGCGCCuCCgUCCu -3'
miRNA:   3'- gcGGCGCCAu---CGAcGCCGCGG-GG-AGG- -5'
13938 5' -64.4 NC_003521.1 + 91704 0.69 0.472737
Target:  5'- uGCUGCGGU--CUGCGuGcCGCuCCUUCCg -3'
miRNA:   3'- gCGGCGCCAucGACGC-C-GCG-GGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 110032 0.69 0.472737
Target:  5'- -cUCGUGGgcgcGCUGCGGUGaCCCCgCCg -3'
miRNA:   3'- gcGGCGCCau--CGACGCCGC-GGGGaGG- -5'
13938 5' -64.4 NC_003521.1 + 98961 0.69 0.472737
Target:  5'- gGUgGCGGcUAGCgacgGCGGCGCCUUUa- -3'
miRNA:   3'- gCGgCGCC-AUCGa---CGCCGCGGGGAgg -5'
13938 5' -64.4 NC_003521.1 + 141298 0.69 0.472737
Target:  5'- aGgUGCaGGU-GCggGCGGCGCCCCggagCCc -3'
miRNA:   3'- gCgGCG-CCAuCGa-CGCCGCGGGGa---GG- -5'
13938 5' -64.4 NC_003521.1 + 80979 0.69 0.472737
Target:  5'- gGgCGCGaGUAGCaGCGGCcCUUCUCCu -3'
miRNA:   3'- gCgGCGC-CAUCGaCGCCGcGGGGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.