miRNA display CGI


Results 101 - 120 of 269 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13938 5' -64.4 NC_003521.1 + 80979 0.69 0.472737
Target:  5'- gGgCGCGaGUAGCaGCGGCcCUUCUCCu -3'
miRNA:   3'- gCgGCGC-CAUCGaCGCCGcGGGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 141298 0.69 0.472737
Target:  5'- aGgUGCaGGU-GCggGCGGCGCCCCggagCCc -3'
miRNA:   3'- gCgGCG-CCAuCGa-CGCCGCGGGGa---GG- -5'
13938 5' -64.4 NC_003521.1 + 204369 0.69 0.467597
Target:  5'- uCGUCGCGGcccAGgaGCGaGCGCaacucgucuccgcggCCCUCCg -3'
miRNA:   3'- -GCGGCGCCa--UCgaCGC-CGCG---------------GGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 109048 0.69 0.481367
Target:  5'- -aCUGUGGUGGCUGCugccGCGCCUCgagcgCCu -3'
miRNA:   3'- gcGGCGCCAUCGACGc---CGCGGGGa----GG- -5'
13938 5' -64.4 NC_003521.1 + 233341 0.69 0.490072
Target:  5'- aGCgGCGGaGGCgGCGGCaGUCCCagCa -3'
miRNA:   3'- gCGgCGCCaUCGaCGCCG-CGGGGagG- -5'
13938 5' -64.4 NC_003521.1 + 215550 0.69 0.481367
Target:  5'- cCGCUgGCGGUGGcCUGCcucugcaucuCGCCCUUCCa -3'
miRNA:   3'- -GCGG-CGCCAUC-GACGcc--------GCGGGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 125378 0.69 0.490072
Target:  5'- aGCUGaCGGcGGCcGUGGUGCCCaUCCc -3'
miRNA:   3'- gCGGC-GCCaUCGaCGCCGCGGGgAGG- -5'
13938 5' -64.4 NC_003521.1 + 117522 0.69 0.481367
Target:  5'- aCGaCgGCGGUGGCgggauggcgGCGGCGCCgggagCCgCCg -3'
miRNA:   3'- -GC-GgCGCCAUCGa--------CGCCGCGG-----GGaGG- -5'
13938 5' -64.4 NC_003521.1 + 62503 0.69 0.490072
Target:  5'- aGCCGCGcGUccAGCcG-GGCGC-CCUCCu -3'
miRNA:   3'- gCGGCGC-CA--UCGaCgCCGCGgGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 123880 0.69 0.472737
Target:  5'- aCGCCGCu---GCUacgGCGGCuGCCCCUgCg -3'
miRNA:   3'- -GCGGCGccauCGA---CGCCG-CGGGGAgG- -5'
13938 5' -64.4 NC_003521.1 + 227160 0.69 0.472737
Target:  5'- gGCCGCGcUGGCcgccGUGGUGCCCC-Cg -3'
miRNA:   3'- gCGGCGCcAUCGa---CGCCGCGGGGaGg -5'
13938 5' -64.4 NC_003521.1 + 204649 0.69 0.472737
Target:  5'- gGCCGCGGagacgAGUUGCGcuCGCUCCUgggCCg -3'
miRNA:   3'- gCGGCGCCa----UCGACGCc-GCGGGGA---GG- -5'
13938 5' -64.4 NC_003521.1 + 164007 0.69 0.490072
Target:  5'- gCGCCGCuGUuGCcGcCGGCGCCgCUCa -3'
miRNA:   3'- -GCGGCGcCAuCGaC-GCCGCGGgGAGg -5'
13938 5' -64.4 NC_003521.1 + 82923 0.69 0.461637
Target:  5'- uGCC-UGGUAgucugcguuagcuuGCUGCGGaCGCCcuCCUCCg -3'
miRNA:   3'- gCGGcGCCAU--------------CGACGCC-GCGG--GGAGG- -5'
13938 5' -64.4 NC_003521.1 + 45958 0.69 0.49885
Target:  5'- uCGCCGCGGUAcgguguccGCU-CGGUGUCCggCCc -3'
miRNA:   3'- -GCGGCGCCAU--------CGAcGCCGCGGGgaGG- -5'
13938 5' -64.4 NC_003521.1 + 160805 0.69 0.48484
Target:  5'- gCGCCGCGucucuGUcuccgcguacgaggaGGCUGCcGC-CCCCUCCu -3'
miRNA:   3'- -GCGGCGC-----CA---------------UCGACGcCGcGGGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 202325 0.68 0.525586
Target:  5'- uGCUGCuGGaacuGCUGcCGGUGCUaCCUCCu -3'
miRNA:   3'- gCGGCG-CCau--CGAC-GCCGCGG-GGAGG- -5'
13938 5' -64.4 NC_003521.1 + 132434 0.68 0.51661
Target:  5'- aCGCCGCuGGUAGCgGUGGUgggcuguucgGCgCgUCCg -3'
miRNA:   3'- -GCGGCG-CCAUCGaCGCCG----------CGgGgAGG- -5'
13938 5' -64.4 NC_003521.1 + 114958 0.68 0.51661
Target:  5'- aGCgGCGGcuGCUGCGGCGUCagucgCCu -3'
miRNA:   3'- gCGgCGCCauCGACGCCGCGGgga--GG- -5'
13938 5' -64.4 NC_003521.1 + 92086 0.68 0.525586
Target:  5'- gGUCGgGGgguGCgcaggGCGGUGCCCCgggUCg -3'
miRNA:   3'- gCGGCgCCau-CGa----CGCCGCGGGGa--GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.