Results 121 - 140 of 269 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13938 | 5' | -64.4 | NC_003521.1 | + | 35028 | 0.68 | 0.51393 |
Target: 5'- gGCggaCGCGGUugGGCacgcucaugccgUGCGGCGCCaccacacaggucuuCCUCCg -3' miRNA: 3'- gCG---GCGCCA--UCG------------ACGCCGCGG--------------GGAGG- -5' |
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13938 | 5' | -64.4 | NC_003521.1 | + | 204084 | 0.68 | 0.571252 |
Target: 5'- aCGUCGUGGgccacguGCaccugGUGGCGCCacugcgCCUCCa -3' miRNA: 3'- -GCGGCGCCau-----CGa----CGCCGCGG------GGAGG- -5' |
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13938 | 5' | -64.4 | NC_003521.1 | + | 202325 | 0.68 | 0.525586 |
Target: 5'- uGCUGCuGGaacuGCUGcCGGUGCUaCCUCCu -3' miRNA: 3'- gCGGCG-CCau--CGAC-GCCGCGG-GGAGG- -5' |
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13938 | 5' | -64.4 | NC_003521.1 | + | 140223 | 0.68 | 0.571252 |
Target: 5'- uCGCCGUGc-AGCaugaugGCGGC-UCCCUCCg -3' miRNA: 3'- -GCGGCGCcaUCGa-----CGCCGcGGGGAGG- -5' |
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13938 | 5' | -64.4 | NC_003521.1 | + | 135018 | 0.68 | 0.571252 |
Target: 5'- uCGCCcuucuCGGUgaAGCUGUgcaGGUGCUCCUCg -3' miRNA: 3'- -GCGGc----GCCA--UCGACG---CCGCGGGGAGg -5' |
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13938 | 5' | -64.4 | NC_003521.1 | + | 209209 | 0.68 | 0.571252 |
Target: 5'- gGCCGCGGUGGCccUGCcaGCugaCCCUgCCg -3' miRNA: 3'- gCGGCGCCAUCG--ACGc-CGcg-GGGA-GG- -5' |
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13938 | 5' | -64.4 | NC_003521.1 | + | 101141 | 0.68 | 0.571252 |
Target: 5'- gGCaCGCGGaaAGC-GCGGCGCggucugcguCCCUCUc -3' miRNA: 3'- gCG-GCGCCa-UCGaCGCCGCG---------GGGAGG- -5' |
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13938 | 5' | -64.4 | NC_003521.1 | + | 239453 | 0.68 | 0.570328 |
Target: 5'- gGCUcggggacaGCGGUGGCccGCGGCgcguucaGCCCCagCCg -3' miRNA: 3'- gCGG--------CGCCAUCGa-CGCCG-------CGGGGa-GG- -5' |
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13938 | 5' | -64.4 | NC_003521.1 | + | 59594 | 0.68 | 0.571252 |
Target: 5'- gCGCCaagaaggaCGGUAGUgGCGGCGgCCCCg-- -3' miRNA: 3'- -GCGGc-------GCCAUCGaCGCCGC-GGGGagg -5' |
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13938 | 5' | -64.4 | NC_003521.1 | + | 124677 | 0.68 | 0.568481 |
Target: 5'- gCGUCGCGGUaggugauggucuuuAGCUGgugcaCGGcCGCCuuuaCCUCCu -3' miRNA: 3'- -GCGGCGCCA--------------UCGAC-----GCC-GCGG----GGAGG- -5' |
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13938 | 5' | -64.4 | NC_003521.1 | + | 113097 | 0.68 | 0.562028 |
Target: 5'- cCGCCGUGGUgcAGgaGCGGC-UCUCgggCCa -3' miRNA: 3'- -GCGGCGCCA--UCgaCGCCGcGGGGa--GG- -5' |
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13938 | 5' | -64.4 | NC_003521.1 | + | 37416 | 0.68 | 0.562028 |
Target: 5'- gGCCugacCGuGUGGC-GCGGCGCCgagCCUCUg -3' miRNA: 3'- gCGGc---GC-CAUCGaCGCCGCGG---GGAGG- -5' |
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13938 | 5' | -64.4 | NC_003521.1 | + | 160509 | 0.68 | 0.562028 |
Target: 5'- cCGCgGCGGgaggaGGggGCGGCaGCCuCCUCg -3' miRNA: 3'- -GCGgCGCCa----UCgaCGCCG-CGG-GGAGg -5' |
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13938 | 5' | -64.4 | NC_003521.1 | + | 117284 | 0.68 | 0.562028 |
Target: 5'- gGCCGUGGU-GC--CGGCuCCCCUCa -3' miRNA: 3'- gCGGCGCCAuCGacGCCGcGGGGAGg -5' |
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13938 | 5' | -64.4 | NC_003521.1 | + | 32888 | 0.68 | 0.562028 |
Target: 5'- gCGCCGcCGGU-GCUGCcgccGUGCCCg-CCg -3' miRNA: 3'- -GCGGC-GCCAuCGACGc---CGCGGGgaGG- -5' |
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13938 | 5' | -64.4 | NC_003521.1 | + | 85476 | 0.68 | 0.552845 |
Target: 5'- uCGUCGUGGUGccGgUGCccGCGCCCCcgCCg -3' miRNA: 3'- -GCGGCGCCAU--CgACGc-CGCGGGGa-GG- -5' |
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13938 | 5' | -64.4 | NC_003521.1 | + | 226908 | 0.68 | 0.552845 |
Target: 5'- gGCCaGCGc-GGCcuccGCGGC-CCCCUCCg -3' miRNA: 3'- gCGG-CGCcaUCGa---CGCCGcGGGGAGG- -5' |
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13938 | 5' | -64.4 | NC_003521.1 | + | 196438 | 0.68 | 0.543707 |
Target: 5'- uCGCC-CGGgucggccGGCUGCcGCGCgaaCCUCCg -3' miRNA: 3'- -GCGGcGCCa------UCGACGcCGCGg--GGAGG- -5' |
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13938 | 5' | -64.4 | NC_003521.1 | + | 232217 | 0.68 | 0.534619 |
Target: 5'- gGUgGUGGUGGCugUGCGGCGUCUgUUg -3' miRNA: 3'- gCGgCGCCAUCG--ACGCCGCGGGgAGg -5' |
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13938 | 5' | -64.4 | NC_003521.1 | + | 239120 | 0.68 | 0.534619 |
Target: 5'- aCGCuCG-GGUuuucCUGCGGCGUCCCcgCCu -3' miRNA: 3'- -GCG-GCgCCAuc--GACGCCGCGGGGa-GG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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