miRNA display CGI


Results 141 - 160 of 269 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13938 5' -64.4 NC_003521.1 + 168794 0.68 0.525586
Target:  5'- cCGCCGCGcUGGCcgccagccUGCuGGCGUcgccgUCCUCCg -3'
miRNA:   3'- -GCGGCGCcAUCG--------ACG-CCGCG-----GGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 32147 0.68 0.525586
Target:  5'- uGCCGCGGccUGGCggUGCGGUaCCgCUCg -3'
miRNA:   3'- gCGGCGCC--AUCG--ACGCCGcGGgGAGg -5'
13938 5' -64.4 NC_003521.1 + 138735 0.68 0.543707
Target:  5'- gGCgGCaGGUGGCagaUGUGGCGCCgCCg-- -3'
miRNA:   3'- gCGgCG-CCAUCG---ACGCCGCGG-GGagg -5'
13938 5' -64.4 NC_003521.1 + 150041 0.68 0.543707
Target:  5'- aCGCCGUGGcguugaGGCguaccgcGCGGcCGCCCUcgCCg -3'
miRNA:   3'- -GCGGCGCCa-----UCGa------CGCC-GCGGGGa-GG- -5'
13938 5' -64.4 NC_003521.1 + 163372 0.68 0.562028
Target:  5'- gGCgGCGGUGGUcGUGGCGCuggcgCCCgaggacgggCCg -3'
miRNA:   3'- gCGgCGCCAUCGaCGCCGCG-----GGGa--------GG- -5'
13938 5' -64.4 NC_003521.1 + 45576 0.68 0.556513
Target:  5'- aGCCGuCGGccagcucgGGCUccggcuccuggcccaGCGGCGCCCgguccaugauCUCCa -3'
miRNA:   3'- gCGGC-GCCa-------UCGA---------------CGCCGCGGG----------GAGG- -5'
13938 5' -64.4 NC_003521.1 + 219434 0.68 0.562028
Target:  5'- aGCCGCcacuGGaacacGCUGCGGCGCcugcugguaCCCUgCCu -3'
miRNA:   3'- gCGGCG----CCau---CGACGCCGCG---------GGGA-GG- -5'
13938 5' -64.4 NC_003521.1 + 238991 0.68 0.525586
Target:  5'- uGCUGCuGGaacuGCUGcCGGUGCUaCCUCCu -3'
miRNA:   3'- gCGGCG-CCau--CGAC-GCCGCGG-GGAGG- -5'
13938 5' -64.4 NC_003521.1 + 220340 0.68 0.525586
Target:  5'- aGCUGCGuGUAcgcGCUGCuGGUGCuguCCUUCCu -3'
miRNA:   3'- gCGGCGC-CAU---CGACG-CCGCG---GGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 166788 0.68 0.51393
Target:  5'- aGCUGCGGgcccuacugacGCUcaucaacucggacGCGGCGCCCCgCUg -3'
miRNA:   3'- gCGGCGCCau---------CGA-------------CGCCGCGGGGaGG- -5'
13938 5' -64.4 NC_003521.1 + 59594 0.68 0.571252
Target:  5'- gCGCCaagaaggaCGGUAGUgGCGGCGgCCCCg-- -3'
miRNA:   3'- -GCGGc-------GCCAUCGaCGCCGC-GGGGagg -5'
13938 5' -64.4 NC_003521.1 + 101141 0.68 0.571252
Target:  5'- gGCaCGCGGaaAGC-GCGGCGCggucugcguCCCUCUc -3'
miRNA:   3'- gCG-GCGCCa-UCGaCGCCGCG---------GGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 209209 0.68 0.571252
Target:  5'- gGCCGCGGUGGCccUGCcaGCugaCCCUgCCg -3'
miRNA:   3'- gCGGCGCCAUCG--ACGc-CGcg-GGGA-GG- -5'
13938 5' -64.4 NC_003521.1 + 135018 0.68 0.571252
Target:  5'- uCGCCcuucuCGGUgaAGCUGUgcaGGUGCUCCUCg -3'
miRNA:   3'- -GCGGc----GCCA--UCGACG---CCGCGGGGAGg -5'
13938 5' -64.4 NC_003521.1 + 140223 0.68 0.571252
Target:  5'- uCGCCGUGc-AGCaugaugGCGGC-UCCCUCCg -3'
miRNA:   3'- -GCGGCGCcaUCGa-----CGCCGcGGGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 204084 0.68 0.571252
Target:  5'- aCGUCGUGGgccacguGCaccugGUGGCGCCacugcgCCUCCa -3'
miRNA:   3'- -GCGGCGCCau-----CGa----CGCCGCGG------GGAGG- -5'
13938 5' -64.4 NC_003521.1 + 28240 0.68 0.552845
Target:  5'- uGCCGCcGUGGCcGUGaGCGCCgCCUg- -3'
miRNA:   3'- gCGGCGcCAUCGaCGC-CGCGG-GGAgg -5'
13938 5' -64.4 NC_003521.1 + 65389 0.68 0.51661
Target:  5'- gCGCCaucuguCGGUacucguccAGCUGuCGGCGCCgCUCUu -3'
miRNA:   3'- -GCGGc-----GCCA--------UCGAC-GCCGCGGgGAGG- -5'
13938 5' -64.4 NC_003521.1 + 122938 0.68 0.51661
Target:  5'- aGCUGuCGGU-GCUG-GGCGCCUcgaucgcgCUCCa -3'
miRNA:   3'- gCGGC-GCCAuCGACgCCGCGGG--------GAGG- -5'
13938 5' -64.4 NC_003521.1 + 132434 0.68 0.51661
Target:  5'- aCGCCGCuGGUAGCgGUGGUgggcuguucgGCgCgUCCg -3'
miRNA:   3'- -GCGGCG-CCAUCGaCGCCG----------CGgGgAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.