miRNA display CGI


Results 61 - 80 of 269 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13938 5' -64.4 NC_003521.1 + 43843 0.71 0.398906
Target:  5'- gGCCGCGGgcccGUcacaGGCGCCCCggCCg -3'
miRNA:   3'- gCGGCGCCau--CGacg-CCGCGGGGa-GG- -5'
13938 5' -64.4 NC_003521.1 + 102701 0.71 0.398906
Target:  5'- uGCCGCGGc--CUGCGGCGCgUCUg- -3'
miRNA:   3'- gCGGCGCCaucGACGCCGCGgGGAgg -5'
13938 5' -64.4 NC_003521.1 + 196731 0.71 0.398906
Target:  5'- gCGaCgGUGGUGGCgGCGGCGCCUgcaCCg -3'
miRNA:   3'- -GC-GgCGCCAUCGaCGCCGCGGGga-GG- -5'
13938 5' -64.4 NC_003521.1 + 108652 0.71 0.398906
Target:  5'- gGUCG-GGuUAGCgUGCGGCGCCUgUCUg -3'
miRNA:   3'- gCGGCgCC-AUCG-ACGCCGCGGGgAGG- -5'
13938 5' -64.4 NC_003521.1 + 146177 0.7 0.414676
Target:  5'- gGCCGCGaGUugcuGGCcgGCGGaCGgCCCUUCa -3'
miRNA:   3'- gCGGCGC-CA----UCGa-CGCC-GCgGGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 49834 0.7 0.414676
Target:  5'- gCGCCGCGGcccacgcGGCagGUGGUGCUCUUCa -3'
miRNA:   3'- -GCGGCGCCa------UCGa-CGCCGCGGGGAGg -5'
13938 5' -64.4 NC_003521.1 + 221910 0.7 0.427563
Target:  5'- gGCgCGCGGcgccacccuucggGGCUgccGCGGCGCCUCgUCCu -3'
miRNA:   3'- gCG-GCGCCa------------UCGA---CGCCGCGGGG-AGG- -5'
13938 5' -64.4 NC_003521.1 + 164703 0.7 0.430823
Target:  5'- gGCCGCGGccGCgGUGGCGCUgCUagcaCCa -3'
miRNA:   3'- gCGGCGCCauCGaCGCCGCGGgGA----GG- -5'
13938 5' -64.4 NC_003521.1 + 103998 0.7 0.439033
Target:  5'- aCGCgGCGGU-GCUGCGGCaCCUgaaccugguuUUCCu -3'
miRNA:   3'- -GCGgCGCCAuCGACGCCGcGGG----------GAGG- -5'
13938 5' -64.4 NC_003521.1 + 27957 0.7 0.439033
Target:  5'- -aCCGCGGUAGaaacgccagGCGGCGCUCacggCCa -3'
miRNA:   3'- gcGGCGCCAUCga-------CGCCGCGGGga--GG- -5'
13938 5' -64.4 NC_003521.1 + 74435 0.7 0.439033
Target:  5'- gCGCCGCGGcgcAGCggccaGCGGCaccuggGCCCCguggcgcgCCa -3'
miRNA:   3'- -GCGGCGCCa--UCGa----CGCCG------CGGGGa-------GG- -5'
13938 5' -64.4 NC_003521.1 + 137164 0.7 0.447332
Target:  5'- gGCCGCGGccGCaGCGGCcGCCgCCgagCUg -3'
miRNA:   3'- gCGGCGCCauCGaCGCCG-CGG-GGa--GG- -5'
13938 5' -64.4 NC_003521.1 + 240462 0.7 0.447332
Target:  5'- gGCaGCGGUcGCa--GGCGCCgCCUCCg -3'
miRNA:   3'- gCGgCGCCAuCGacgCCGCGG-GGAGG- -5'
13938 5' -64.4 NC_003521.1 + 142359 0.7 0.447332
Target:  5'- cCGCCGCGGccGCcGCcGC-CUCCUCCa -3'
miRNA:   3'- -GCGGCGCCauCGaCGcCGcGGGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 200854 0.7 0.447332
Target:  5'- gGCaGCGGUcGCa--GGCGCCgCCUCCg -3'
miRNA:   3'- gCGgCGCCAuCGacgCCGCGG-GGAGG- -5'
13938 5' -64.4 NC_003521.1 + 143960 0.7 0.447332
Target:  5'- gCGCgGCGGUAGCUGuCGacgcaCGCCagCUUCCa -3'
miRNA:   3'- -GCGgCGCCAUCGAC-GCc----GCGG--GGAGG- -5'
13938 5' -64.4 NC_003521.1 + 180854 0.7 0.447332
Target:  5'- aGCUGCGGUcucgaGGCUGaCGGCGCUauaagauacaUCUCg -3'
miRNA:   3'- gCGGCGCCA-----UCGAC-GCCGCGG----------GGAGg -5'
13938 5' -64.4 NC_003521.1 + 36550 0.7 0.455717
Target:  5'- uGUCGCGGUccgAGgUGCGcaGCGCCUCgaUCCa -3'
miRNA:   3'- gCGGCGCCA---UCgACGC--CGCGGGG--AGG- -5'
13938 5' -64.4 NC_003521.1 + 130400 0.7 0.455717
Target:  5'- gGUgGCGGcAGCgGCGGCGCCgCCg-- -3'
miRNA:   3'- gCGgCGCCaUCGaCGCCGCGG-GGagg -5'
13938 5' -64.4 NC_003521.1 + 96781 0.7 0.455717
Target:  5'- uCGCCGcCGGcAGCaGCGGCGgCgCUCg -3'
miRNA:   3'- -GCGGC-GCCaUCGaCGCCGCgGgGAGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.